1u1d: Difference between revisions

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-{{Seed}}
-[[Image:1u1d.png|left|200px]]
-<!--
+==Structure of e. coli uridine phosphorylase complexed to 5-(phenylthio)acyclouridine (ptau)==
-The line below this paragraph, containing "STRUCTURE_1u1d", creates the "Structure Box" on the page.
+<StructureSection load='1u1d' size='340' side='right'caption='[[1u1d]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1u1d]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1U1D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1U1D FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.001&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=181:1-((2-HYDROXYETHOXY)METHYL)-5-(PHENYLTHIO)PYRIMIDINE-2,4(1H,3H)-DIONE'>181</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-{{STRUCTURE_1u1d|  PDB=1u1d  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1u1d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1u1d OCA], [https://pdbe.org/1u1d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1u1d RCSB], [https://www.ebi.ac.uk/pdbsum/1u1d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1u1d ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/UDP_ECOLI UDP_ECOLI] Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis.
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/u1/1u1d_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1u1d ConSurf].
+<div style="clear:both"></div>
-===Structure of e. coli uridine phosphorylase complexed to 5-(phenylthio)acyclouridine (ptau)===
+==See Also==
+*[[Uridine phosphorylase 3D structures|Uridine phosphorylase 3D structures]]
+__TOC__
-<!--
+</StructureSection>
-The line below this paragraph, {{ABSTRACT_PUBMED_15983408}}, adds the Publication Abstract to the page
-(as it appears on PubMed at http://www.pubmed.gov), where 15983408 is the PubMed ID number.
--->
-{{ABSTRACT_PUBMED_15983408}}
-==About this Structure==
-U1D is a 6 chains structure of sequences from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1U1D OCA].
-==Reference==
-<ref group="xtra">PMID:15983408</ref><references group="xtra"/>
 [[Category: Escherichia coli]]
-[[Category: Uridine phosphorylase]]
+[[Category: Large Structures]]
-[[Category: Bu, W.]]
+[[Category: Bu W]]
-[[Category: Ealick, S E.]]
+[[Category: Ealick SE]]
-[[Category: Settembre, E C.]]
+[[Category: Settembre EC]]
-[[Category: Ptau]]
-[[Category: Pyrimidine nucleoside phosphorylase]]
-[[Category: Uridine salvage]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 16:05:59 2009''