1tvl: Difference between revisions

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==Structure of YTNJ from Bacillus subtilis==
==Structure of YTNJ from Bacillus subtilis==
<StructureSection load='1tvl' size='340' side='right' caption='[[1tvl]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
<StructureSection load='1tvl' size='340' side='right'caption='[[1tvl]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[1tvl]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TVL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1TVL FirstGlance]. <br>
<table><tr><td colspan='2'>[[1tvl]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TVL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1TVL FirstGlance]. <br>
</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">YTNJ ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 Bacillus subtilis])</td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.104&#8491;</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1tvl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tvl OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1tvl RCSB], [http://www.ebi.ac.uk/pdbsum/1tvl PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/1tvl TOPSAN]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1tvl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tvl OCA], [https://pdbe.org/1tvl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1tvl RCSB], [https://www.ebi.ac.uk/pdbsum/1tvl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1tvl ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/1tvl TOPSAN]</span></td></tr>
</table>
</table>
== Function ==
[https://www.uniprot.org/uniprot/MOXC_BACSU MOXC_BACSU] May play a role in methionine degradation. May play a role in a sulfur salvage pathway.<ref>PMID:11423008</ref>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
   <jmolCheckbox>
   <jmolCheckbox>
     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/tv/1tvl_consurf.spt"</scriptWhenChecked>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/tv/1tvl_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
     <text>to colour the structure by Evolutionary Conservation</text>
   </jmolCheckbox>
   </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1tvl ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
== References ==
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Bacillus subtilis]]
[[Category: Bacillus subtilis]]
[[Category: Burley, S K]]
[[Category: Large Structures]]
[[Category: Gorman, J]]
[[Category: Burley SK]]
[[Category: Structural genomic]]
[[Category: Gorman J]]
[[Category: Shapiro, L]]
[[Category: Shapiro L]]
[[Category: Beta-alpha barrel]]
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
[[Category: Oxidoreductase]]
[[Category: PSI, Protein structure initiative]]

Latest revision as of 11:42, 14 February 2024

Structure of YTNJ from Bacillus subtilisStructure of YTNJ from Bacillus subtilis

Structural highlights

1tvl is a 1 chain structure with sequence from Bacillus subtilis. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.104Å
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

MOXC_BACSU May play a role in methionine degradation. May play a role in a sulfur salvage pathway.[1]

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

References

  1. ↑ Sekowska A, Robin S, Daudin JJ, Henaut A, Danchin A. Extracting biological information from DNA arrays: an unexpected link between arginine and methionine metabolism in Bacillus subtilis. Genome Biol. 2001;2(6):RESEARCH0019. Epub 2001 Jun 1. PMID:11423008

1tvl, resolution 2.10Å

Drag the structure with the mouse to rotate

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