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[[Image:1tpc.jpg|left|200px]]


{{Structure
==OFFSET OF A CATALYTIC LESION BY A BOUND WATER SOLUBLE==
|PDB= 1tpc |SIZE=350|CAPTION= <scene name='initialview01'>1tpc</scene>, resolution 1.9&Aring;
<StructureSection load='1tpc' size='340' side='right'caption='[[1tpc]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
|SITE=  
== Structural highlights ==
|LIGAND= <scene name='pdbligand=PGH:PHOSPHOGLYCOLOHYDROXAMIC+ACID'>PGH</scene>
<table><tr><td colspan='2'>[[1tpc]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TPC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1TPC FirstGlance]. <br>
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Triose-phosphate_isomerase Triose-phosphate isomerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.1.1 5.3.1.1] </span>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
|GENE=  
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PGH:PHOSPHOGLYCOLOHYDROXAMIC+ACID'>PGH</scene></td></tr>
|DOMAIN=
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1tpc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tpc OCA], [https://pdbe.org/1tpc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1tpc RCSB], [https://www.ebi.ac.uk/pdbsum/1tpc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1tpc ProSAT]</span></td></tr>
|RELATEDENTRY=
</table>
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1tpc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tpc OCA], [http://www.ebi.ac.uk/pdbsum/1tpc PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1tpc RCSB]</span>
== Function ==
}}
[https://www.uniprot.org/uniprot/TPIS_CHICK TPIS_CHICK]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/tp/1tpc_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1tpc ConSurf].
<div style="clear:both"></div>


'''OFFSET OF A CATALYTIC LESION BY A BOUND WATER SOLUBLE'''
==See Also==
 
*[[Triose phosphate isomerase 3D structures|Triose phosphate isomerase 3D structures]]
 
__TOC__
==Overview==
</StructureSection>
The structural basis for the improvement in catalytic efficiency of the mutant E165D chicken triosephosphate isomerase by the secondary mutation, S96P, has been analyzed using a combination of X-ray crystallography and Fourier transform infrared spectroscopy. All X-ray structures were of the complex of phosphoglycolohydroxamate (PGH), an intermediate analog, with the isomerase, and each was solved to a resolution of 1.9 A. Comparison of the structure of the double mutant, E165D.S96P, with that of the single mutant, E165D, as well as with the wild-type isomerase shows only insignificant differences in the positions of the side chains in all of the mutants when compared with the wild-type isomerase, except that in both the E165D and E165D.S96P mutants, the aspartate side chain was approximately 0.7 A further away from the substrate analog than the glutamate side chain. Significant differences were observed in the crystal structure of the E165D.S96P double mutant in the positions of ordered water molecules bound at the active site. The loss of two water molecules located near the side chain at position 165 was observed in isomerases containing the S96P mutation. The resulting increase in hydrophobicity of the pocket probably causes an increase in the pKa of the catalytic base, D165, thereby improving its basicity. A new ordered water molecule was observed underneath the bound PGH in the E165D.S96P structure, which likely decreases the pKa's of the substrate protons, thereby increasing their acidity. An enzyme derived carbonyl stretch at 1746 cm-1 that is only observed in the IR spectrum of the E165D.S96P double mutant isomerase with bound substrates has been assigned to a stable ground state protonated D165-enediol(ate) intermediate complex. Thus, the gain in activity resulting from the S96P second site change probably results from a combination of improving the basicity of the enzyme, improving the acidity of the substrate protons, and stabilization of a reaction intermediate. All three of these effects seem to be caused by changes in bound water molecules.
 
==About this Structure==
1TPC is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TPC OCA].
 
==Reference==
The structural basis for pseudoreversion of the E165D lesion by the secondary S96P mutation in triosephosphate isomerase depends on the positions of active site water molecules., Komives EA, Lougheed JC, Liu K, Sugio S, Zhang Z, Petsko GA, Ringe D, Biochemistry. 1995 Oct 17;34(41):13612-21. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/7577950 7577950]
[[Category: Gallus gallus]]
[[Category: Gallus gallus]]
[[Category: Single protein]]
[[Category: Large Structures]]
[[Category: Triose-phosphate isomerase]]
[[Category: Knowles JR]]
[[Category: Knowles, J R.]]
[[Category: Komives EA]]
[[Category: Komives, E A.]]
[[Category: Liu KD]]
[[Category: Liu, K D.]]
[[Category: Petsko GA]]
[[Category: Petsko, G A.]]
[[Category: Ringe D]]
[[Category: Ringe, D.]]
[[Category: Sugio S]]
[[Category: Sugio, S.]]
[[Category: Zhang Z]]
[[Category: Zhang, Z.]]
[[Category: isomerase(intramolecular oxidoreductse)]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 23:59:20 2008''

Latest revision as of 11:40, 14 February 2024

OFFSET OF A CATALYTIC LESION BY A BOUND WATER SOLUBLEOFFSET OF A CATALYTIC LESION BY A BOUND WATER SOLUBLE

Structural highlights

1tpc is a 2 chain structure with sequence from Gallus gallus. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.9Å
Ligands:
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

TPIS_CHICK

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

1tpc, resolution 1.90Å

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