1tkl: Difference between revisions

From Proteopedia
Jump to navigation Jump to search
← Older edit
No edit summary
No edit summary
 
(8 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{Seed}}
[[Image:1tkl.png|left|200px]]


<!--
==Yeast Oxygen-Dependent Coproporphyrinogen Oxidase==
The line below this paragraph, containing "STRUCTURE_1tkl", creates the "Structure Box" on the page.
<StructureSection load='1tkl' size='340' side='right'caption='[[1tkl]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1tkl]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TKL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1TKL FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-->
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1tkl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tkl OCA], [https://pdbe.org/1tkl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1tkl RCSB], [https://www.ebi.ac.uk/pdbsum/1tkl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1tkl ProSAT]</span></td></tr>
{{STRUCTURE_1tkl|  PDB=1tkl  |  SCENE=  }}
</table>
 
== Function ==
===Yeast Oxygen-Dependent Coproporphyrinogen Oxidase===
[https://www.uniprot.org/uniprot/HEM6_YEAST HEM6_YEAST] Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen-IX (By similarity).
 
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
<!--
Check<jmol>
The line below this paragraph, {{ABSTRACT_PUBMED_15194705}}, adds the Publication Abstract to the page
  <jmolCheckbox>
(as it appears on PubMed at http://www.pubmed.gov), where 15194705 is the PubMed ID number.
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/tk/1tkl_consurf.spt"</scriptWhenChecked>
-->
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
{{ABSTRACT_PUBMED_15194705}}
    <text>to colour the structure by Evolutionary Conservation</text>
 
  </jmolCheckbox>
==About this Structure==
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1tkl ConSurf].
1TKL is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TKL OCA].  
<div style="clear:both"></div>
 
__TOC__
==Reference==
</StructureSection>
<ref group="xtra">PMID:15194705</ref><references group="xtra"/>
[[Category: Large Structures]]
[[Category: Coproporphyrinogen oxidase]]
[[Category: Saccharomyces cerevisiae]]
[[Category: Saccharomyces cerevisiae]]
[[Category: Ferrara, J D.]]
[[Category: Ferrara JD]]
[[Category: Hill, C P.]]
[[Category: Hill CP]]
[[Category: Kushner, J P.]]
[[Category: Kushner JP]]
[[Category: Labbe, P.]]
[[Category: Labbe P]]
[[Category: Pflugrath, J W.]]
[[Category: Pflugrath JW]]
[[Category: Phillips, J D.]]
[[Category: Phillips JD]]
[[Category: Robinson, H.]]
[[Category: Robinson H]]
[[Category: Warby, C A.]]
[[Category: Warby CA]]
[[Category: Whitby, F G.]]
[[Category: Whitby FG]]
[[Category: Yang, C.]]
[[Category: Yang C]]
[[Category: Coproporphyrinogen oxidase]]
[[Category: Enzyme]]
[[Category: Heme biosynthesis]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 00:25:35 2009''

Latest revision as of 11:40, 14 February 2024

Yeast Oxygen-Dependent Coproporphyrinogen OxidaseYeast Oxygen-Dependent Coproporphyrinogen Oxidase

Structural highlights

1tkl is a 2 chain structure with sequence from Saccharomyces cerevisiae. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2Å
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

HEM6_YEAST Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen-IX (By similarity).

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

1tkl, resolution 2.00Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
Retrieved from "https://proteopedia.openfox.io/wiki/index.php?title=1tkl&oldid=4055585"