1t5b: Difference between revisions

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{{Seed}}
[[Image:1t5b.png|left|200px]]


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==Structural genomics, A protein from Salmonella typhimurium similar to E. coli acyl carrier protein phosphodiesterase==
The line below this paragraph, containing "STRUCTURE_1t5b", creates the "Structure Box" on the page.
<StructureSection load='1t5b' size='340' side='right'caption='[[1t5b]], [[Resolution|resolution]] 1.40&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1t5b]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_Typhimurium Salmonella enterica subsp. enterica serovar Typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1T5B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1T5B FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.4&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene></td></tr>
{{STRUCTURE_1t5b|  PDB=1t5b  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1t5b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1t5b OCA], [https://pdbe.org/1t5b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1t5b RCSB], [https://www.ebi.ac.uk/pdbsum/1t5b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1t5b ProSAT], [https://www.topsan.org/Proteins/MCSG/1t5b TOPSAN]</span></td></tr>
 
</table>
===Structural genomics, A protein from Salmonella typhimurium similar to E. coli acyl carrier protein phosphodiesterase===
== Function ==
 
[https://www.uniprot.org/uniprot/AZOR_SALTY AZOR_SALTY] Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity.[HAMAP-Rule:MF_01216]
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
1T5B is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Salmonella_typhimurium Salmonella typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1T5B OCA].  
Check<jmol>
[[Category: Salmonella typhimurium]]
  <jmolCheckbox>
[[Category: Single protein]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/t5/1t5b_consurf.spt"</scriptWhenChecked>
[[Category: Collart, F.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Joachimiak, A.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: MCSG, Midwest Center for Structural Genomics.]]
  </jmolCheckbox>
[[Category: Wu, R.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1t5b ConSurf].
[[Category: Zhang, R.]]
<div style="clear:both"></div>
[[Category: Acyl carrier protein phosphodiesterase]]
__TOC__
[[Category: Alpha/beta/alpha sandwich]]
</StructureSection>
[[Category: Fmn]]
[[Category: Large Structures]]
[[Category: Mcsg]]
[[Category: Salmonella enterica subsp. enterica serovar Typhimurium]]
[[Category: Midwest center for structural genomic]]
[[Category: Collart F]]
[[Category: Protein structure initiative]]
[[Category: Joachimiak A]]
[[Category: Psi]]
[[Category: Wu R]]
[[Category: Structural genomic]]
[[Category: Zhang R]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Sep 28 22:08:21 2008''

Latest revision as of 11:36, 14 February 2024

Structural genomics, A protein from Salmonella typhimurium similar to E. coli acyl carrier protein phosphodiesteraseStructural genomics, A protein from Salmonella typhimurium similar to E. coli acyl carrier protein phosphodiesterase

Structural highlights

1t5b is a 2 chain structure with sequence from Salmonella enterica subsp. enterica serovar Typhimurium. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.4Å
Ligands:
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

AZOR_SALTY Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity.[HAMAP-Rule:MF_01216]

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

1t5b, resolution 1.40Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
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