1t5b: Difference between revisions

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-[[Image:1t5b.gif|left|200px]]
- {{Structure
+==Structural genomics, A protein from Salmonella typhimurium similar to E. coli acyl carrier protein phosphodiesterase==
-|PDB= 1t5b |SIZE=350|CAPTION= <scene name='initialview01'>1t5b</scene>, resolution 1.40&Aring;
+<StructureSection load='1t5b' size='340' side='right'caption='[[1t5b]], [[Resolution|resolution]] 1.40&Aring;' scene=''>
-|SITE=
+== Structural highlights ==
-|LIGAND= <scene name='pdbligand=FMN:FLAVIN MONONUCLEOTIDE'>FMN</scene>
+<table><tr><td colspan='2'>[[1t5b]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_Typhimurium Salmonella enterica subsp. enterica serovar Typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1T5B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1T5B FirstGlance]. <br>
-|ACTIVITY= [http://en.wikipedia.org/wiki/[Acyl-carrier-protein]_phosphodiesterase [Acyl-carrier-protein] phosphodiesterase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.4.14 3.1.4.14]
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.4&#8491;</td></tr>
-|GENE= ACPD, STM1642, STY1427, T1545 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=602 Salmonella typhimurium])
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene></td></tr>
-}}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1t5b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1t5b OCA], [https://pdbe.org/1t5b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1t5b RCSB], [https://www.ebi.ac.uk/pdbsum/1t5b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1t5b ProSAT], [https://www.topsan.org/Proteins/MCSG/1t5b TOPSAN]</span></td></tr>
+</table>
-'''Structural genomics, A protein from Salmonella typhimurium similar to E. coli acyl carrier protein phosphodiesterase'''
+== Function ==
+[https://www.uniprot.org/uniprot/AZOR_SALTY AZOR_SALTY] Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity.[HAMAP-Rule:MF_01216]
+== Evolutionary Conservation ==
-==About this Structure==
+[[Image:Consurf_key_small.gif|200px|right]]
-T5B is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Salmonella_typhimurium Salmonella typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1T5B OCA].
+Check<jmol>
-[[Category: Salmonella typhimurium]]
+  <jmolCheckbox>
-[[Category: Single protein]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/t5/1t5b_consurf.spt"</scriptWhenChecked>
-[[Category: [Acyl-carrier-protein] phosphodiesterase]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-[[Category: Collart, F.]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: Joachimiak, A.]]
+  </jmolCheckbox>
-[[Category: MCSG, Midwest Center for Structural Genomics.]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1t5b ConSurf].
-[[Category: Wu, R.]]
+<div style="clear:both"></div>
-[[Category: Zhang, R.]]
+__TOC__
-[[Category: FMN]]
+</StructureSection>
-[[Category: acyl carrier protein phosphodiesterase]]
+[[Category: Large Structures]]
-[[Category: alpha/beta/alpha sandwich]]
+[[Category: Salmonella enterica subsp. enterica serovar Typhimurium]]
-[[Category: fmn]]
+[[Category: Collart F]]
-[[Category: mcsg]]
+[[Category: Joachimiak A]]
-[[Category: midwest center for structural genomic]]
+[[Category: Wu R]]
-[[Category: protein structure initiative]]
+[[Category: Zhang R]]
-[[Category: psi]]
-[[Category: structural genomic]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 14:13:57 2008''