1sg9: Difference between revisions

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-{{Seed}}
-[[Image:1sg9.png|left|200px]]
-<!--
+==Crystal structure of Thermotoga maritima protein HEMK, an N5-glutamine methyltransferase==
-The line below this paragraph, containing "STRUCTURE_1sg9", creates the "Structure Box" on the page.
+<StructureSection load='1sg9' size='340' side='right'caption='[[1sg9]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1sg9]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SG9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1SG9 FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GLN:GLUTAMINE'>GLN</scene>, <scene name='pdbligand=SAM:S-ADENOSYLMETHIONINE'>SAM</scene></td></tr>
-{{STRUCTURE_1sg9|  PDB=1sg9  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1sg9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1sg9 OCA], [https://pdbe.org/1sg9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1sg9 RCSB], [https://www.ebi.ac.uk/pdbsum/1sg9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1sg9 ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/1sg9 TOPSAN]</span></td></tr>
+</table>
-===Crystal structure of Thermotoga maritima protein HEMK, an N5-glutamine methyltransferase===
+== Function ==
+[https://www.uniprot.org/uniprot/PRMC_THEMA PRMC_THEMA] Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif.
+== Evolutionary Conservation ==
-==About this Structure==
+[[Image:Consurf_key_small.gif|200px|right]]
-SG9 is a 3 chains structure of sequences from [http://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SG9 OCA].
+Check<jmol>
+  <jmolCheckbox>
-==Reference==
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/sg/1sg9_consurf.spt"</scriptWhenChecked>
-A novel mode of dimerization via formation of a glutamate anhydride crosslink in a protein crystal structure., Agarwal R, Burley SK, Swaminathan S, Proteins. 2008 May 1;71(2):1038-41. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18247349 18247349]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1sg9 ConSurf].
+<div style="clear:both"></div>
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
 [[Category: Thermotoga maritima]]
-[[Category: Agarwal, R.]]
+[[Category: Agarwal R]]
-[[Category: Burley, S K.]]
+[[Category: Burley SK]]
-[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
+[[Category: Swaminathan S]]
-[[Category: Swaminathan, S.]]
-[[Category: Hemk protein]]
-[[Category: Hypothetical protein]]
-[[Category: New york sgx research center for structural genomic]]
-[[Category: Nysgxrc]]
-[[Category: Protein structure initiative]]
-[[Category: Psi]]
-[[Category: Structural genomic]]
-[[Category: Unknown function]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 17:54:36 2008''