1s2g: Difference between revisions

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-{{Seed}}
-[[Image:1s2g.png|left|200px]]
-<!--
+==Purine 2'deoxyribosyltransferase + 2'-deoxyadenosine==
-The line below this paragraph, containing "STRUCTURE_1s2g", creates the "Structure Box" on the page.
+<StructureSection load='1s2g' size='340' side='right'caption='[[1s2g]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1s2g]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Lactobacillus_helveticus Lactobacillus helveticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1S2G OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1S2G FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=3D1:(2R,3S,5R)-5-(6-AMINO-9H-PURIN-9-YL)-TETRAHYDRO-2-(HYDROXYMETHYL)FURAN-3-OL'>3D1</scene></td></tr>
-{{STRUCTURE_1s2g|  PDB=1s2g  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1s2g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1s2g OCA], [https://pdbe.org/1s2g PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1s2g RCSB], [https://www.ebi.ac.uk/pdbsum/1s2g PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1s2g ProSAT]</span></td></tr>
+</table>
-===Purine 2'deoxyribosyltransferase + 2'-deoxyadenosine===
+== Function ==
+[https://www.uniprot.org/uniprot/Q8RLY5_LACHE Q8RLY5_LACHE]
+== Evolutionary Conservation ==
-<!--
+[[Image:Consurf_key_small.gif|200px|right]]
-The line below this paragraph, {{ABSTRACT_PUBMED_14992575}}, adds the Publication Abstract to the page
+Check<jmol>
-(as it appears on PubMed at http://www.pubmed.gov), where 14992575 is the PubMed ID number.
+  <jmolCheckbox>
--->
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/s2/1s2g_consurf.spt"</scriptWhenChecked>
-{{ABSTRACT_PUBMED_14992575}}
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
-==About this Structure==
+  </jmolCheckbox>
-S2G is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Lactobacillus_helveticus Lactobacillus helveticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1S2G OCA].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1s2g ConSurf].
+<div style="clear:both"></div>
-==Reference==
+__TOC__
-Structures of purine 2'-deoxyribosyltransferase, substrate complexes, and the ribosylated enzyme intermediate at 2.0 A resolution., Anand R, Kaminski PA, Ealick SE, Biochemistry. 2004 Mar 9;43(9):2384-93. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/14992575 14992575]
+</StructureSection>
 [[Category: Lactobacillus helveticus]]
-[[Category: Nucleoside deoxyribosyltransferase]]
+[[Category: Large Structures]]
-[[Category: Single protein]]
+[[Category: Anand R]]
-[[Category: Anand, R.]]
+[[Category: Ealick SE]]
-[[Category: Ealick, S E.]]
+[[Category: Kaminski PA]]
-[[Category: Kaminski, P A.]]
-[[Category: 2'-deoxyadenosine]]
-[[Category: 2'-purine deoxyribosyltansferase]]
-[[Category: Ptd]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 29 00:46:24 2008''