1ryn: Difference between revisions

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-{{Seed}}
-[[Image:1ryn.png|left|200px]]
-<!--
+==Structure of the Chloroplast Group II Intron Splicing Factor CRS2==
-The line below this paragraph, containing "STRUCTURE_1ryn", creates the "Structure Box" on the page.
+<StructureSection load='1ryn' size='340' side='right'caption='[[1ryn]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1ryn]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Zea_mays Zea mays]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RYN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1RYN FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.75&#8491;</td></tr>
--->
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ryn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ryn OCA], [https://pdbe.org/1ryn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ryn RCSB], [https://www.ebi.ac.uk/pdbsum/1ryn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ryn ProSAT]</span></td></tr>
-{{STRUCTURE_1ryn|  PDB=1ryn  |  SCENE=  }}
+</table>
+== Function ==
-===Structure of the Chloroplast Group II Intron Splicing Factor CRS2===
+[https://www.uniprot.org/uniprot/CRS2_MAIZE CRS2_MAIZE] Required for the splicing of group IIB introns in chloroplasts. Forms complexes with either CAF1 or CAF2 which, in turn, interact with RNA and confer intron specificity of the splicing particles. Has no peptidyl-tRNA hydrolase activity.<ref>PMID:11179231</ref> <ref>PMID:9090875</ref> <ref>PMID:10481026</ref> <ref>PMID:12881426</ref>
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
-<!--
+Check<jmol>
-The line below this paragraph, {{ABSTRACT_PUBMED_15567410}}, adds the Publication Abstract to the page
+  <jmolCheckbox>
-(as it appears on PubMed at http://www.pubmed.gov), where 15567410 is the PubMed ID number.
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ry/1ryn_consurf.spt"</scriptWhenChecked>
--->
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-{{ABSTRACT_PUBMED_15567410}}
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
-==About this Structure==
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ryn ConSurf].
-RYN is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Zea_mays Zea mays]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RYN OCA].
+<div style="clear:both"></div>
+== References ==
-==Reference==
+<references/>
-Structural analysis of the group II intron splicing factor CRS2 yields insights into its protein and RNA interaction surfaces., Ostheimer GJ, Hadjivassiliou H, Kloer DP, Barkan A, Matthews BW, J Mol Biol. 2005 Jan 7;345(1):51-68. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15567410 15567410]
+__TOC__
-[[Category: Single protein]]
+</StructureSection>
+[[Category: Large Structures]]
 [[Category: Zea mays]]
-[[Category: Barkan, A.]]
+[[Category: Barkan A]]
-[[Category: Matthews, B W.]]
+[[Category: Matthews BW]]
-[[Category: Ostheimer, G J.]]
+[[Category: Ostheimer GJ]]
-[[Category: Alpha-beta]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 10:07:35 2008''