1rv8: Difference between revisions

← Older edit

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-{{Seed}}
-[[Image:1rv8.png|left|200px]]
-<!--
+==Class II fructose-1,6-bisphosphate aldolase from Thermus aquaticus in complex with cobalt==
-The line below this paragraph, containing "STRUCTURE_1rv8", creates the "Structure Box" on the page.
+<StructureSection load='1rv8' size='340' side='right'caption='[[1rv8]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1rv8]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_aquaticus Thermus aquaticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RV8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1RV8 FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-{{STRUCTURE_1rv8|  PDB=1rv8  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1rv8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rv8 OCA], [https://pdbe.org/1rv8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1rv8 RCSB], [https://www.ebi.ac.uk/pdbsum/1rv8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1rv8 ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/Q9RHA2_THEAQ Q9RHA2_THEAQ]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rv/1rv8_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1rv8 ConSurf].
+<div style="clear:both"></div>
-===Class II fructose-1,6-bisphosphate aldolase from Thermus aquaticus in complex with cobalt===
+==See Also==
+*[[Aldolase 3D structures|Aldolase 3D structures]]
+__TOC__
-<!--
+</StructureSection>
-The line below this paragraph, {{ABSTRACT_PUBMED_14699122}}, adds the Publication Abstract to the page
+[[Category: Large Structures]]
-(as it appears on PubMed at http://www.pubmed.gov), where 14699122 is the PubMed ID number.
--->
-{{ABSTRACT_PUBMED_14699122}}
-==About this Structure==
-RV8 is a 4 chains structure of sequences from [http://en.wikipedia.org/wiki/Thermus_aquaticus Thermus aquaticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RV8 OCA].
-==Reference==
-<ref group="xtra">PMID:14699122</ref><references group="xtra"/>
-[[Category: Fructose-bisphosphate aldolase]]
 [[Category: Thermus aquaticus]]
-[[Category: Izard, T.]]
+[[Category: Izard T]]
-[[Category: Sygusch, J.]]
+[[Category: Sygusch J]]
-[[Category: Class ii aldolase]]
-[[Category: Metal-depdendent aldolase]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 09:41:20 2009''