1qzc: Difference between revisions

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-{{Seed}}
-[[Image:1qzc.png|left|200px]]
-<!--
+==Coordinates of S12, SH44, LH69 and SRL separately fitted into the cryo-EM map of EF-Tu ternary complex (GDP.Kirromycin) bound 70S ribosome==
-The line below this paragraph, containing "STRUCTURE_1qzc", creates the "Structure Box" on the page.
+<SX load='1qzc' size='340' side='right' viewer='molstar' caption='[[1qzc]], [[Resolution|resolution]] 9.00&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1qzc]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] and [https://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QZC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1QZC FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 9&#8491;</td></tr>
--->
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1qzc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qzc OCA], [https://pdbe.org/1qzc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1qzc RCSB], [https://www.ebi.ac.uk/pdbsum/1qzc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1qzc ProSAT]</span></td></tr>
-{{STRUCTURE_1qzc|  PDB=1qzc  |  SCENE=  }}
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/RS12_THET8 RS12_THET8] With S4 and S5 plays an important role in translational accuracy (By similarity).[HAMAP-Rule:MF_00403_B]  Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.[HAMAP-Rule:MF_00403_B]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qz/1qzc_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1qzc ConSurf].
+<div style="clear:both"></div>
-===Coordinates of S12, SH44, LH69 and SRL separately fitted into the cryo-EM map of EF-Tu ternary complex (GDP.Kirromycin) bound 70S ribosome===
+==See Also==
+*[[Ribosomal protein S12|Ribosomal protein S12]]
+__TOC__
-<!--
+</SX>
-The line below this paragraph, {{ABSTRACT_PUBMED_14566331}}, adds the Publication Abstract to the page
-(as it appears on PubMed at http://www.pubmed.gov), where 14566331 is the PubMed ID number.
--->
-{{ABSTRACT_PUBMED_14566331}}
-==About this Structure==
-QZC is a 4 chains structure of sequences from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] and [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QZC OCA].
-==Reference==
-<ref group="xtra">PMID:14566331</ref><references group="xtra"/>
 [[Category: Escherichia coli]]
+[[Category: Large Structures]]
 [[Category: Thermus thermophilus]]
-[[Category: Ehrenberg, M.]]
+[[Category: Ehrenberg M]]
-[[Category: Frank, J.]]
+[[Category: Frank J]]
-[[Category: Harvey, S C.]]
+[[Category: Harvey SC]]
-[[Category: Li, W.]]
+[[Category: Li W]]
-[[Category: Nielsen, R C.]]
+[[Category: Nielsen RC]]
-[[Category: Nissen, P.]]
+[[Category: Nissen P]]
-[[Category: Sengupta, J.]]
+[[Category: Sengupta J]]
-[[Category: Stagg, S M.]]
+[[Category: Stagg SM]]
-[[Category: Valle, M.]]
+[[Category: Valle M]]
-[[Category: Zavialov, A.]]
+[[Category: Zavialov A]]
-[[Category: Ribosomal protein]]
-[[Category: Rna binding protein/rna complex]]
-[[Category: Rrna]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Oct 28 09:39:25 2009''