1qwl: Difference between revisions

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{{Seed}}
[[Image:1qwl.png|left|200px]]


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==Structure of Helicobacter pylori catalase==
The line below this paragraph, containing "STRUCTURE_1qwl", creates the "Structure Box" on the page.
<StructureSection load='1qwl' size='340' side='right'caption='[[1qwl]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1qwl]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Helicobacter_pylori Helicobacter pylori]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QWL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1QWL FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AZI:AZIDE+ION'>AZI</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=OXY:OXYGEN+MOLECULE'>OXY</scene></td></tr>
{{STRUCTURE_1qwl| PDB=1qwl |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1qwl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qwl OCA], [https://pdbe.org/1qwl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1qwl RCSB], [https://www.ebi.ac.uk/pdbsum/1qwl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1qwl ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/CATA_HELPY CATA_HELPY] Decomposes hydrogen peroxide into water and oxygen; serves to protect cells from the toxic effects of hydrogen peroxide.
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qw/1qwl_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1qwl ConSurf].
<div style="clear:both"></div>


===Structure of Helicobacter pylori catalase===
==See Also==
 
*[[Catalase 3D structures|Catalase 3D structures]]
 
__TOC__
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</StructureSection>
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(as it appears on PubMed at http://www.pubmed.gov), where 15023060 is the PubMed ID number.
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{{ABSTRACT_PUBMED_15023060}}
 
==About this Structure==
1QWL is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Helicobacter_pylori Helicobacter pylori]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QWL OCA].
 
==Reference==
Structure of Helicobacter pylori catalase, with and without formic acid bound, at 1.6 A resolution., Loewen PC, Carpena X, Rovira C, Ivancich A, Perez-Luque R, Haas R, Odenbreit S, Nicholls P, Fita I, Biochemistry. 2004 Mar 23;43(11):3089-103. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15023060 15023060]
[[Category: Catalase]]
[[Category: Helicobacter pylori]]
[[Category: Helicobacter pylori]]
[[Category: Single protein]]
[[Category: Large Structures]]
[[Category: Carpena, X.]]
[[Category: Carpena X]]
[[Category: Fita, I.]]
[[Category: Fita I]]
[[Category: Haas, R.]]
[[Category: Haas R]]
[[Category: Loewen, P C.]]
[[Category: Loewen PC]]
[[Category: Nicholls, P.]]
[[Category: Nicholls P]]
[[Category: Obenbreit, S.]]
[[Category: Obenbreit S]]
[[Category: Perez-Luque, R.]]
[[Category: Perez-Luque R]]
[[Category: Rovira, C.]]
[[Category: Rovira C]]
[[Category: Azide complex]]
[[Category: Beta barrel]]
[[Category: Oxyferryl complex]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Jul 27 20:07:21 2008''

Latest revision as of 11:18, 14 February 2024

Structure of Helicobacter pylori catalaseStructure of Helicobacter pylori catalase

Structural highlights

1qwl is a 2 chain structure with sequence from Helicobacter pylori. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.6Å
Ligands:, ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

CATA_HELPY Decomposes hydrogen peroxide into water and oxygen; serves to protect cells from the toxic effects of hydrogen peroxide.

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

1qwl, resolution 1.60Å

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