1q2v: Difference between revisions

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[[Image:1q2v.png|left|200px]]


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==Crystal structure of the chaperonin from Thermococcus strain KS-1 (nucleotide-free form)==
The line below this paragraph, containing "STRUCTURE_1q2v", creates the "Structure Box" on the page.
<StructureSection load='1q2v' size='340' side='right'caption='[[1q2v]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1q2v]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermococcus_sp._JCM_11816 Thermococcus sp. JCM 11816]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Q2V OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Q2V FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
{{STRUCTURE_1q2v| PDB=1q2v |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1q2v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1q2v OCA], [https://pdbe.org/1q2v PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1q2v RCSB], [https://www.ebi.ac.uk/pdbsum/1q2v PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1q2v ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/THSA_THEK1 THSA_THEK1] Molecular chaperone; binds unfolded polypeptides in vitro, and has a weak ATPase activity.
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/q2/1q2v_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1q2v ConSurf].
<div style="clear:both"></div>


===Crystal structure of the chaperonin from Thermococcus strain KS-1 (nucleotide-free form)===
==See Also==
 
*[[Chaperonin 3D structures|Chaperonin 3D structures]]
 
__TOC__
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</StructureSection>
The line below this paragraph, {{ABSTRACT_PUBMED_14729342}}, adds the Publication Abstract to the page
[[Category: Large Structures]]
(as it appears on PubMed at http://www.pubmed.gov), where 14729342 is the PubMed ID number.
[[Category: Thermococcus sp. JCM 11816]]
-->
[[Category: Iizuka R]]
{{ABSTRACT_PUBMED_14729342}}
[[Category: Maruyama T]]
 
[[Category: Miki K]]
==About this Structure==
[[Category: Shomura Y]]
1Q2V is a 4 chains structure of sequences from [http://en.wikipedia.org/wiki/Thermococcus_sp. Thermococcus sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Q2V OCA].
[[Category: Yohda M]]
 
[[Category: Yoshida T]]
==Reference==
<ref group="xtra">PMID:14729342</ref><references group="xtra"/>
[[Category: Chaperonin ATPase]]
[[Category: Thermococcus sp.]]
[[Category: Iizuka, R.]]
[[Category: Maruyama, T.]]
[[Category: Miki, K.]]
[[Category: Shomura, Y.]]
[[Category: Yohda, M.]]
[[Category: Yoshida, T.]]
[[Category: Closed state]]
[[Category: Hexadecamer]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 03:57:57 2009''

Latest revision as of 11:12, 14 February 2024

Crystal structure of the chaperonin from Thermococcus strain KS-1 (nucleotide-free form)Crystal structure of the chaperonin from Thermococcus strain KS-1 (nucleotide-free form)

Structural highlights

1q2v is a 4 chain structure with sequence from Thermococcus sp. JCM 11816. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.4Å
Ligands:
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

THSA_THEK1 Molecular chaperone; binds unfolded polypeptides in vitro, and has a weak ATPase activity.

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

1q2v, resolution 2.40Å

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Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
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