1q0f: Difference between revisions

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-[[Image:1q0f.png|left|200px]]
-<!--
+==Crystal structure of Ni-containing superoxide dismutase with Ni-ligation corresponding to the state after partial x-ray-induced reduction==
-The line below this paragraph, containing "STRUCTURE_1q0f", creates the "Structure Box" on the page.
+<StructureSection load='1q0f' size='340' side='right'caption='[[1q0f]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1q0f]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_seoulensis Streptomyces seoulensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Q0F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Q0F FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=3NI:NICKEL+(III)+ION'>3NI</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-{{STRUCTURE_1q0f|  PDB=1q0f  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1q0f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1q0f OCA], [https://pdbe.org/1q0f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1q0f RCSB], [https://www.ebi.ac.uk/pdbsum/1q0f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1q0f ProSAT]</span></td></tr>
+</table>
-===Crystal structure of Ni-containing superoxide dismutase with Ni-ligation corresponding to the state after partial x-ray-induced reduction===
+== Function ==
+[https://www.uniprot.org/uniprot/SODN_STRSO SODN_STRSO]
+== Evolutionary Conservation ==
-<!--
+[[Image:Consurf_key_small.gif|200px|right]]
-The line below this paragraph, {{ABSTRACT_PUBMED_15173586}}, adds the Publication Abstract to the page
+Check<jmol>
-(as it appears on PubMed at http://www.pubmed.gov), where 15173586 is the PubMed ID number.
+  <jmolCheckbox>
--->
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/q0/1q0f_consurf.spt"</scriptWhenChecked>
-{{ABSTRACT_PUBMED_15173586}}
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
-==About this Structure==
+  </jmolCheckbox>
-[[1q0f]] is a 12 chain structure of [[Superoxide Dismutase]] with sequence from [http://en.wikipedia.org/wiki/Streptomyces_seoulensis Streptomyces seoulensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Q0F OCA].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1q0f ConSurf].
+<div style="clear:both"></div>
 ==See Also==
-*[[Superoxide Dismutase]]
+*[[Superoxide dismutase 3D structures|Superoxide dismutase 3D structures]]
+__TOC__
-==Reference==
+</StructureSection>
-<ref group="xtra">PMID:15173586</ref><references group="xtra"/>
+[[Category: Large Structures]]
 [[Category: Streptomyces seoulensis]]
-[[Category: Superoxide dismutase]]
+[[Category: Djinovic Carugo K]]
-[[Category: Carugo, K Djinovic.]]
+[[Category: Kang S-O]]
-[[Category: Kang, S O.]]
+[[Category: Lee J-W]]
-[[Category: Lee, J W.]]
+[[Category: Wuerges J]]
-[[Category: Wuerges, J.]]
+[[Category: Yim H-S]]
-[[Category: Yim, H S.]]
+[[Category: Yim Y-I]]
-[[Category: Yim, Y I.]]
-[[Category: Homohexamer of four-helix bundle]]
-[[Category: Oxidoreductase]]