1pv1: Difference between revisions

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-{{Seed}}
-[[Image:1pv1.png|left|200px]]
-<!--
+==Crystal Structure Analysis of Yeast Hypothetical Protein: YJG8_YEAST==
-The line below this paragraph, containing "STRUCTURE_1pv1", creates the "Structure Box" on the page.
+<StructureSection load='1pv1' size='340' side='right'caption='[[1pv1]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1pv1]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PV1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1PV1 FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
--->
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1pv1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pv1 OCA], [https://pdbe.org/1pv1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1pv1 RCSB], [https://www.ebi.ac.uk/pdbsum/1pv1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1pv1 ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/1pv1 TOPSAN]</span></td></tr>
-{{STRUCTURE_1pv1|  PDB=1pv1  |  SCENE=  }}
+</table>
+== Function ==
-===Crystal Structure Analysis of Yeast Hypothetical Protein: YJG8_YEAST===
+[https://www.uniprot.org/uniprot/SFGH_YEAST SFGH_YEAST] Serine hydrolase involved in the detoxification of formaldehyde.
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
-<!--
+Check<jmol>
-The line below this paragraph, {{ABSTRACT_PUBMED_18707125}}, adds the Publication Abstract to the page
+  <jmolCheckbox>
-(as it appears on PubMed at http://www.pubmed.gov), where 18707125 is the PubMed ID number.
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pv/1pv1_consurf.spt"</scriptWhenChecked>
--->
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-{{ABSTRACT_PUBMED_18707125}}
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
-==About this Structure==
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1pv1 ConSurf].
-PV1 is a 4 chains structure of sequences from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PV1 OCA].
+<div style="clear:both"></div>
+__TOC__
-==Reference==
+</StructureSection>
-Structural characterization and reversal of the natural organophosphate resistance of a D-type esterase, Saccharomyces cerevisiae S-formylglutathione hydrolase., Legler PM, Kumaran D, Swaminathan S, Studier FW, Millard CB, Biochemistry. 2008 Sep 9;47(36):9592-601. Epub 2008 Aug 16. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18707125 18707125]
+[[Category: Large Structures]]
 [[Category: Saccharomyces cerevisiae]]
-[[Category: Burley, S K.]]
+[[Category: Burley SK]]
-[[Category: Eswaramoorthy, S.]]
+[[Category: Eswaramoorthy S]]
-[[Category: Kumaran, D.]]
+[[Category: Kumaran D]]
-[[Category: Millard, C.]]
+[[Category: Millard C]]
-[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
+[[Category: Swaminathan S]]
-[[Category: Swaminathan, S.]]
-[[Category: Esterase]]
-[[Category: Hydrolase]]
-[[Category: Hypothetical]]
-[[Category: New york sgx research center for structural genomic]]
-[[Category: Nysgxrc]]
-[[Category: Protein structure initiative]]
-[[Category: Psi]]
-[[Category: Structural genomic]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Nov 12 09:59:04 2008''