1pgw: Difference between revisions

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[[Image:1pgw.png|left|200px]]


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==BEAN POD MOTTLE VIRUS (BPMV), TOP COMPONENT==
The line below this paragraph, containing "STRUCTURE_1pgw", creates the "Structure Box" on the page.
<StructureSection load='1pgw' size='340' side='right'caption='[[1pgw]], [[Resolution|resolution]] 2.90&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)  
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1pgw]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bean-pod_mottle_virus_(strain_Kentucky_G7) Bean-pod mottle virus (strain Kentucky G7)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PGW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1PGW FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.9&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1pgw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pgw OCA], [https://pdbe.org/1pgw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1pgw RCSB], [https://www.ebi.ac.uk/pdbsum/1pgw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1pgw ProSAT]</span></td></tr>
{{STRUCTURE_1pgw| PDB=1pgw |  SCENE= }}
</table>
== Function ==
[https://www.uniprot.org/uniprot/POL2_BPMV POL2_BPMV] Movement protein: transports viral genome to neighboring plant cells directly through plasmosdesmata, without any budding. The movement protein allows efficient cell to cell propagation, by bypassing the host cell wall barrier. Acts by forming a tubular structure at the host plasmodesmata, enlarging it enough to allow free passage of virion capsids (By similarity).
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pg/1pgw_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1pgw ConSurf].
<div style="clear:both"></div>


===BEAN POD MOTTLE VIRUS (BPMV), TOP COMPONENT===
==See Also==
 
*[[Virus coat proteins 3D structures|Virus coat proteins 3D structures]]
 
__TOC__
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The line below this paragraph, {{ABSTRACT_PUBMED_14517057}}, adds the Publication Abstract to the page
[[Category: Large Structures]]
(as it appears on PubMed at http://www.pubmed.gov), where 14517057 is the PubMed ID number.
[[Category: Cavarelli J]]
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[[Category: Johnson JE]]
{{ABSTRACT_PUBMED_14517057}}
[[Category: Lin T]]
 
==About this Structure==
1PGW is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Bean_pod_mottle_virus Bean pod mottle virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PGW OCA].
 
==Reference==
Evidence for assembly-dependent folding of protein and RNA in an icosahedral virus., Lin T, Cavarelli J, Johnson JE, Virology. 2003 Sep 15;314(1):26-33. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/14517057 14517057]
[[Category: Bean pod mottle virus]]
[[Category: Protein complex]]
[[Category: Cavarelli, J.]]
[[Category: Johnson, J E.]]
[[Category: Lin, T.]]
[[Category: Comovirus]]
[[Category: Icosahedral virus]]
[[Category: Virus]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 16:50:16 2008''

Latest revision as of 11:07, 14 February 2024

BEAN POD MOTTLE VIRUS (BPMV), TOP COMPONENTBEAN POD MOTTLE VIRUS (BPMV), TOP COMPONENT

Structural highlights

1pgw is a 2 chain structure with sequence from Bean-pod mottle virus (strain Kentucky G7). Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.9Å
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

POL2_BPMV Movement protein: transports viral genome to neighboring plant cells directly through plasmosdesmata, without any budding. The movement protein allows efficient cell to cell propagation, by bypassing the host cell wall barrier. Acts by forming a tubular structure at the host plasmodesmata, enlarging it enough to allow free passage of virion capsids (By similarity).

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

1pgw, resolution 2.90Å

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