1pc5: Difference between revisions

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-{{Seed}}
-[[Image:1pc5.png|left|200px]]
-<!--
+==Crystal Structure of the P50G Mutant of Ferredoxin I at 1.8 A Resolution==
-The line below this paragraph, containing "STRUCTURE_1pc5", creates the "Structure Box" on the page.
+<StructureSection load='1pc5' size='340' side='right'caption='[[1pc5]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1pc5]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Azotobacter_vinelandii Azotobacter vinelandii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PC5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1PC5 FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=F3S:FE3-S4+CLUSTER'>F3S</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr>
-{{STRUCTURE_1pc5|  PDB=1pc5  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1pc5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pc5 OCA], [https://pdbe.org/1pc5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1pc5 RCSB], [https://www.ebi.ac.uk/pdbsum/1pc5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1pc5 ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/FER1_AZOVI FER1_AZOVI] Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. This ferredoxin could play a role in regulating gene expression by interacting directly with DNA.
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pc/1pc5_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1pc5 ConSurf].
+<div style="clear:both"></div>
-===Crystal Structure of the P50G Mutant of Ferredoxin I at 1.8 A Resolution===
+==See Also==
+*[[Ferredoxin 3D structures|Ferredoxin 3D structures]]
+__TOC__
-<!--
+</StructureSection>
-The line below this paragraph, {{ABSTRACT_PUBMED_12962482}}, adds the Publication Abstract to the page
-(as it appears on PubMed at http://www.pubmed.gov), where 12962482 is the PubMed ID number.
--->
-{{ABSTRACT_PUBMED_12962482}}
-==About this Structure==
-PC5 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Azotobacter_vinelandii Azotobacter vinelandii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PC5 OCA].
-==Reference==
-Mechanisms of redox-coupled proton transfer in proteins: role of the proximal proline in reactions of the [3Fe-4S] cluster in Azotobacter vinelandii ferredoxin I., Camba R, Jung YS, Hunsicker-Wang LM, Burgess BK, Stout CD, Hirst J, Armstrong FA, Biochemistry. 2003 Sep 16;42(36):10589-99. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12962482 12962482]
 [[Category: Azotobacter vinelandii]]
-[[Category: Single protein]]
+[[Category: Large Structures]]
-[[Category: Armstrong, F A.]]
+[[Category: Armstrong FA]]
-[[Category: Burgess, B K.]]
+[[Category: Burgess BK]]
-[[Category: Camba, R.]]
+[[Category: Camba R]]
-[[Category: Chen, K.]]
+[[Category: Chen K]]
-[[Category: Hirst, J.]]
+[[Category: Hirst J]]
-[[Category: Hunsicker-Wang, L M.]]
+[[Category: Hunsicker-Wang LM]]
-[[Category: Jung, Y S.]]
+[[Category: Jung YS]]
-[[Category: Stout, C D.]]
+[[Category: Stout CD]]
-[[Category: Electron transport]]
-[[Category: Ferredoxin]]
-[[Category: Iron-sulfur protein]]
-[[Category: Mutant]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 05:04:21 2008''