1oyr: Difference between revisions

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-[[Image:1oyr.png|left|200px]]
-{{STRUCTURE_1oyr|  PDB=1oyr  |  SCENE=  }}
+==Crystal structure of the phosphorolytic exoribonuclease RNase PH from Bacillus subtilis==
+<StructureSection load='1oyr' size='340' side='right'caption='[[1oyr]], [[Resolution|resolution]] 3.10&Aring;' scene=''>
-===Crystal structure of the phosphorolytic exoribonuclease RNase PH from Bacillus subtilis===
+== Structural highlights ==
+<table><tr><td colspan='2'>[[1oyr]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OYR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1OYR FirstGlance]. <br>
-{{ABSTRACT_PUBMED_14767080}}
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.1&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CD:CADMIUM+ION'>CD</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-==About this Structure==
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1oyr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1oyr OCA], [https://pdbe.org/1oyr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1oyr RCSB], [https://www.ebi.ac.uk/pdbsum/1oyr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1oyr ProSAT]</span></td></tr>
-[[1oyr]] is a 6 chain structure of [[Ribonuclease]] with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OYR OCA].
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/RNPH_BACSU RNPH_BACSU] Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates. Plays a role in the secondary pathway of 23S rRNA 3' end maturation.<ref>PMID:19880604</ref>
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oy/1oyr_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1oyr ConSurf].
+<div style="clear:both"></div>
 ==See Also==
-*[[Ribonuclease|Ribonuclease]]
+*[[Ribonuclease 3D structures|Ribonuclease 3D structures]]
+== References ==
-==Reference==
+<references/>
-<ref group="xtra">PMID:014767080</ref><references group="xtra"/>
+__TOC__
+</StructureSection>
 [[Category: Bacillus subtilis]]
-[[Category: TRNA nucleotidyltransferase]]
+[[Category: Large Structures]]
-[[Category: Harlow, L S.]]
+[[Category: Harlow LS]]
-[[Category: Jensen, K F.]]
+[[Category: Jensen KF]]
-[[Category: Kadziola, A.]]
+[[Category: Kadziola A]]
-[[Category: Larsen, S.]]
+[[Category: Larsen S]]
-[[Category: Transferase]]
-[[Category: Trna processing]]