1nc5: Difference between revisions

← Older edit

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-[[Image:1nc5.gif|left|200px]]
- {{Structure
+==Structure of Protein of Unknown Function of YteR from Bacillus Subtilis==
-|PDB= 1nc5 |SIZE=350|CAPTION= <scene name='initialview01'>1nc5</scene>, resolution 1.60&Aring;
+<StructureSection load='1nc5' size='340' side='right'caption='[[1nc5]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
-|SITE=
+== Structural highlights ==
-|LIGAND=
+<table><tr><td colspan='2'>[[1nc5]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NC5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1NC5 FirstGlance]. <br>
-|ACTIVITY=
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
-|GENE= YTER ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 Bacillus subtilis])
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1nc5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1nc5 OCA], [https://pdbe.org/1nc5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1nc5 RCSB], [https://www.ebi.ac.uk/pdbsum/1nc5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1nc5 ProSAT], [https://www.topsan.org/Proteins/MCSG/1nc5 TOPSAN]</span></td></tr>
-}}
+</table>
+== Function ==
-'''Structure of Protein of Unknown Function of YteR from Bacillus Subtilis'''
+[https://www.uniprot.org/uniprot/URHG2_BACSU URHG2_BACSU] Catalyzes the hydrolysis of unsaturated rhamnogalacturonan disaccharide to yield unsaturated D-galacturonic acid and L-rhamnose. It cannot act on unsaturated glucuronyl hydrolase (UGL) substrates containing unsaturated D-glucuronic acid at the non-reducing terminus, although the active pockets of YesR and UGL are very similar.<ref>PMID:16781735</ref>
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
-==About this Structure==
+Check<jmol>
-NC5 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NC5 OCA].
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/nc/1nc5_consurf.spt"</scriptWhenChecked>
-==Reference==
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-.6 A crystal structure of YteR protein from Bacillus subtilis, a predicted lyase., Zhang R, Minh T, Lezondra L, Korolev S, Moy SF, Collart F, Joachimiak A, Proteins. 2005 Aug 15;60(3):561-5. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15906318 15906318]
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1nc5 ConSurf].
+<div style="clear:both"></div>
+== References ==
+<references/>
+__TOC__
+</StructureSection>
 [[Category: Bacillus subtilis]]
-[[Category: Single protein]]
+[[Category: Large Structures]]
-[[Category: Collart, F.]]
+[[Category: Collart F]]
-[[Category: Joachimiak, A.]]
+[[Category: Joachimiak A]]
-[[Category: Korolev, S.]]
+[[Category: Korolev S]]
-[[Category: Lozondra, L.]]
+[[Category: Lozondra L]]
-[[Category: MCSG, Midwest Center for Structural Genomics.]]
+[[Category: Zhang R]]
-[[Category: Zhang, R.]]
-[[Category: helix barrel]]
-[[Category: mcsg]]
-[[Category: midwest center for structural genomic]]
-[[Category: protein structure initiative]]
-[[Category: psi]]
-[[Category: structural genomic]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 12:54:56 2008''