1n0f: Difference between revisions

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 ==CRYSTAL STRUCTURE OF A CELL DIVISION AND CELL WALL BIOSYNTHESIS PROTEIN UPF0040 FROM MYCOPLASMA PNEUMONIAE: INDICATION OF A NOVEL FOLD WITH A POSSIBLE NEW CONSERVED SEQUENCE MOTIF==
-<StructureSection load='1n0f' size='340' side='right' caption='[[1n0f]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
+<StructureSection load='1n0f' size='340' side='right'caption='[[1n0f]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[1n0f]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Mycoplasma_pneumoniae Mycoplasma pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1N0F OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1N0F FirstGlance]. <br>
+<table><tr><td colspan='2'>[[1n0f]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Mycoplasma_pneumoniae Mycoplasma pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1N0F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1N0F FirstGlance]. <br>
-</td></tr><tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1n0e|1n0e]], [[1n0g|1n0g]]</td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
-<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1n0f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1n0f OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1n0f RCSB], [http://www.ebi.ac.uk/pdbsum/1n0f PDBsum], [http://www.topsan.org/Proteins/BSGC/1n0f TOPSAN]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1n0f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1n0f OCA], [https://pdbe.org/1n0f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1n0f RCSB], [https://www.ebi.ac.uk/pdbsum/1n0f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1n0f ProSAT], [https://www.topsan.org/Proteins/BSGC/1n0f TOPSAN]</span></td></tr>
-<table>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/MRAZ_MYCPN MRAZ_MYCPN]
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/n0/1n0f_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/n0/1n0f_consurf.spt"</scriptWhenChecked>
      <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
-</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1n0f ConSurf].
 <div style="clear:both"></div>
-<div style="background-color:#fffaf0;">
-== Publication Abstract from PubMed ==
-UPF0040 is a family of proteins implicated in a cellular function of bacteria cell division. There is no structure information available on protein of this family. We have determined the crystal structure of a protein from Mycoplasma pneumoniae that belongs to this family using X-ray crystallography. Structural homology search reveals that this protein has a novel fold with no significant similarity to any proteins of known three-dimensional structure. The crystal structures of the protein in three different crystal forms reveal that the protein exists as a ring of octamer. The conserved protein residues, including a highly conserved DXXXR motif, are examined on the basis of crystal structure.
-Crystal structure of a protein associated with cell division from Mycoplasma pneumoniae (GI: 13508053): a novel fold with a conserved sequence motif.,Chen S, Jancrick J, Yokota H, Kim R, Kim SH Proteins. 2004 Jun 1;55(4):785-91. PMID:15146477<ref>PMID:15146477</ref>
-From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-</div>
-== References ==
-<references/>
 __TOC__
 </StructureSection>
+[[Category: Large Structures]]
 [[Category: Mycoplasma pneumoniae]]
-[[Category: BSGC, Berkeley Structural Genomics Center.]]
+[[Category: Chen S]]
-[[Category: Chen, S.]]
+[[Category: Jancrick J]]
-[[Category: Jancrick, J.]]
+[[Category: Kim R]]
-[[Category: Kim, R.]]
+[[Category: Kim S-H]]
-[[Category: Kim, S H.]]
+[[Category: Yokota H]]
-[[Category: Yokota, H.]]
-[[Category: Berkeley structural genomics center]]
-[[Category: Biosynthetic protein]]
-[[Category: Bsgc structure funded by nih]]
-[[Category: Cell division]]
-[[Category: Cell wall biosynthesis protein]]
-[[Category: Protein structure initiative]]
-[[Category: Psi]]
-[[Category: Structural genomic]]