1m65: Difference between revisions

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-[[Image:1m65.gif|left|200px]]
-<!--
+==YCDX PROTEIN==
-The line below this paragraph, containing "STRUCTURE_1m65", creates the "Structure Box" on the page.
+<StructureSection load='1m65' size='340' side='right'caption='[[1m65]], [[Resolution|resolution]] 1.57&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1m65]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1M65 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1M65 FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.57&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-{{STRUCTURE_1m65|  PDB=1m65  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1m65 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1m65 OCA], [https://pdbe.org/1m65 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1m65 RCSB], [https://www.ebi.ac.uk/pdbsum/1m65 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1m65 ProSAT]</span></td></tr>
+</table>
-'''YCDX PROTEIN'''
+== Function ==
+[https://www.uniprot.org/uniprot/YCDX_ECOLI YCDX_ECOLI] Hydrolyzes p-nitrophenyl phosphate (pNPP) in vitro. Involved in the swarming motility process.<ref>PMID:21965574</ref>
+== Evolutionary Conservation ==
-==About this Structure==
+[[Image:Consurf_key_small.gif|200px|right]]
-M65 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1M65 OCA].
+Check<jmol>
+  <jmolCheckbox>
-==Reference==
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/m6/1m65_consurf.spt"</scriptWhenChecked>
-Crystal structure of the Escherichia coli YcdX protein reveals a trinuclear zinc active site., Teplyakov A, Obmolova G, Khil PP, Howard AJ, Camerini-Otero RD, Gilliland GL, Proteins. 2003 May 1;51(2):315-8. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12661000 12661000]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1m65 ConSurf].
+<div style="clear:both"></div>
+== References ==
+<references/>
+__TOC__
+</StructureSection>
 [[Category: Escherichia coli]]
-[[Category: Single protein]]
+[[Category: Large Structures]]
-[[Category: Camerini-Otero, R D.]]
+[[Category: Camerini-Otero RD]]
-[[Category: Gilliland, G L.]]
+[[Category: Gilliland GL]]
-[[Category: Khil, P P.]]
+[[Category: Khil PP]]
-[[Category: Obmolova, G.]]
+[[Category: Obmolova G]]
-[[Category: S2F, Structure 2.Function Project.]]
+[[Category: Teplyakov A]]
-[[Category: Teplyakov, A.]]
-[[Category: Beta-alpha-barrel]]
-[[Category: Metallo-enzyme]]
-[[Category: S2f]]
-[[Category: Structural genomic]]
-[[Category: Structure 2 function project]]
-[[Category: Zinc]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May  3 00:40:52 2008''