1m4y: Difference between revisions

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-{{Seed}}
-[[Image:1m4y.png|left|200px]]
-<!--
+==Crystal structure of HslV from Thermotoga maritima==
-The line below this paragraph, containing "STRUCTURE_1m4y", creates the "Structure Box" on the page.
+<StructureSection load='1m4y' size='340' side='right'caption='[[1m4y]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1m4y]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1M4Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1M4Y FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-{{STRUCTURE_1m4y|  PDB=1m4y  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1m4y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1m4y OCA], [https://pdbe.org/1m4y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1m4y RCSB], [https://www.ebi.ac.uk/pdbsum/1m4y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1m4y ProSAT]</span></td></tr>
+</table>
-===Crystal structure of HslV from Thermotoga maritima===
+== Function ==
+[https://www.uniprot.org/uniprot/HSLV_THEMA HSLV_THEMA] Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery.<ref>PMID:12646382</ref>
+== Evolutionary Conservation ==
-<!--
+[[Image:Consurf_key_small.gif|200px|right]]
-The line below this paragraph, {{ABSTRACT_PUBMED_12646382}}, adds the Publication Abstract to the page
+Check<jmol>
-(as it appears on PubMed at http://www.pubmed.gov), where 12646382 is the PubMed ID number.
+  <jmolCheckbox>
--->
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/m4/1m4y_consurf.spt"</scriptWhenChecked>
-{{ABSTRACT_PUBMED_12646382}}
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
-==About this Structure==
+  </jmolCheckbox>
-M4Y is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1M4Y OCA].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1m4y ConSurf].
+<div style="clear:both"></div>
-==Reference==
+== References ==
-Isolation and characterization of the prokaryotic proteasome homolog HslVU (ClpQY) from Thermotoga maritima and the crystal structure of HslV., Song HK, Bochtler M, Azim MK, Hartmann C, Huber R, Ramachandran R, Biophys Chem. 2003;100(1-3):437-52. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12646382 12646382]
+<references/>
-[[Category: Single protein]]
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
 [[Category: Thermotoga maritima]]
-[[Category: Azim, M K.]]
+[[Category: Azim MK]]
-[[Category: Bochtler, M B.]]
+[[Category: Bochtler MB]]
-[[Category: Hartmann, C.]]
+[[Category: Hartmann C]]
-[[Category: Huber, R.]]
+[[Category: Huber R]]
-[[Category: Ramachandran, R.]]
+[[Category: Ramachandran R]]
-[[Category: Song, H K.]]
+[[Category: Song HK]]
-[[Category: N-terminal catalytic threonine residue]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul  2 23:13:16 2008''