1m2d: Difference between revisions

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[[Image:1m2d.png|left|200px]]


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==Crystal structure at 1.05 Angstroms resolution of the Cys59Ser variant of the thioredoxin-like [2Fe-2S] ferredoxin from Aquifex aeolicus==
The line below this paragraph, containing "STRUCTURE_1m2d", creates the "Structure Box" on the page.
<StructureSection load='1m2d' size='340' side='right'caption='[[1m2d]], [[Resolution|resolution]] 1.05&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)  
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1m2d]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1M2D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1M2D FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.05&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene></td></tr>
{{STRUCTURE_1m2d| PDB=1m2d |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1m2d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1m2d OCA], [https://pdbe.org/1m2d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1m2d RCSB], [https://www.ebi.ac.uk/pdbsum/1m2d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1m2d ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/FER2_AQUAE FER2_AQUAE] Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/m2/1m2d_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1m2d ConSurf].
<div style="clear:both"></div>


===Crystal structure at 1.05 Angstroms resolution of the Cys59Ser variant of the thioredoxin-like [2Fe-2S] ferredoxin from Aquifex aeolicus===
==See Also==
 
*[[Ferredoxin 3D structures|Ferredoxin 3D structures]]
 
__TOC__
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(as it appears on PubMed at http://www.pubmed.gov), where 12089152 is the PubMed ID number.
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{{ABSTRACT_PUBMED_12089152}}
 
==About this Structure==
1M2D is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1M2D OCA].
 
==Reference==
<ref group="xtra">PMID:12089152</ref><references group="xtra"/>
[[Category: Aquifex aeolicus]]
[[Category: Aquifex aeolicus]]
[[Category: Ambroggio, X I.]]
[[Category: Large Structures]]
[[Category: Andrade, S L.A.]]
[[Category: Ambroggio XI]]
[[Category: Chatelet, C.]]
[[Category: Andrade SLA]]
[[Category: Einsle, O.]]
[[Category: Chatelet C]]
[[Category: Meyer, J.]]
[[Category: Einsle O]]
[[Category: Rees, D C.]]
[[Category: Meyer J]]
[[Category: Yeh, A P.]]
[[Category: Rees DC]]
[[Category: Cys59ser variant]]
[[Category: Yeh AP]]
[[Category: Ferredoxin]]
[[Category: Thioredoxin-like fold]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 06:16:19 2009''

Latest revision as of 10:38, 14 February 2024

Crystal structure at 1.05 Angstroms resolution of the Cys59Ser variant of the thioredoxin-like [2Fe-2S] ferredoxin from Aquifex aeolicusCrystal structure at 1.05 Angstroms resolution of the Cys59Ser variant of the thioredoxin-like [2Fe-2S] ferredoxin from Aquifex aeolicus

Structural highlights

1m2d is a 2 chain structure with sequence from Aquifex aeolicus. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.05Å
Ligands:
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

FER2_AQUAE Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

1m2d, resolution 1.05Å

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