1m2d: Difference between revisions

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-[[Image:1m2d.png|left|200px]]
-<!--
+==Crystal structure at 1.05 Angstroms resolution of the Cys59Ser variant of the thioredoxin-like [2Fe-2S] ferredoxin from Aquifex aeolicus==
-The line below this paragraph, containing "STRUCTURE_1m2d", creates the "Structure Box" on the page.
+<StructureSection load='1m2d' size='340' side='right'caption='[[1m2d]], [[Resolution|resolution]] 1.05&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1m2d]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1M2D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1M2D FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.05&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene></td></tr>
-{{STRUCTURE_1m2d|  PDB=1m2d  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1m2d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1m2d OCA], [https://pdbe.org/1m2d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1m2d RCSB], [https://www.ebi.ac.uk/pdbsum/1m2d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1m2d ProSAT]</span></td></tr>
+</table>
-===Crystal structure at 1.05 Angstroms resolution of the Cys59Ser variant of the thioredoxin-like [2Fe-2S] ferredoxin from Aquifex aeolicus===
+== Function ==
+[https://www.uniprot.org/uniprot/FER2_AQUAE FER2_AQUAE] Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
+== Evolutionary Conservation ==
-<!--
+[[Image:Consurf_key_small.gif|200px|right]]
-The line below this paragraph, {{ABSTRACT_PUBMED_12089152}}, adds the Publication Abstract to the page
+Check<jmol>
-(as it appears on PubMed at http://www.pubmed.gov), where 12089152 is the PubMed ID number.
+  <jmolCheckbox>
--->
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/m2/1m2d_consurf.spt"</scriptWhenChecked>
-{{ABSTRACT_PUBMED_12089152}}
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
-==About this Structure==
+  </jmolCheckbox>
-[[1m2d]] is a 2 chain structure of [[Ferredoxin]] with sequence from [http://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1M2D OCA].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1m2d ConSurf].
+<div style="clear:both"></div>
 ==See Also==
-*[[Ferredoxin]]
+*[[Ferredoxin 3D structures|Ferredoxin 3D structures]]
+__TOC__
-==Reference==
+</StructureSection>
-<ref group="xtra">PMID:12089152</ref><references group="xtra"/>
 [[Category: Aquifex aeolicus]]
-[[Category: Ambroggio, X I.]]
+[[Category: Large Structures]]
-[[Category: Andrade, S L.A.]]
+[[Category: Ambroggio XI]]
-[[Category: Chatelet, C.]]
+[[Category: Andrade SLA]]
-[[Category: Einsle, O.]]
+[[Category: Chatelet C]]
-[[Category: Meyer, J.]]
+[[Category: Einsle O]]
-[[Category: Rees, D C.]]
+[[Category: Meyer J]]
-[[Category: Yeh, A P.]]
+[[Category: Rees DC]]
-[[Category: Cys59ser variant]]
+[[Category: Yeh AP]]
-[[Category: Electron transport]]
-[[Category: Ferredoxin]]
-[[Category: Thioredoxin-like fold]]