357d: Difference between revisions

From Proteopedia
Jump to navigation Jump to search
← Older edit
No edit summary
No edit summary
 
(8 intermediate revisions by the same user not shown)
Line 1: Line 1:
[[Image:357d.gif|left|200px]]


<!--
==3.5 A structure of fragment I from E. coli 5S RRNA==
The line below this paragraph, containing "STRUCTURE_357d", creates the "Structure Box" on the page.
<StructureSection load='357d' size='340' side='right'caption='[[357d]], [[Resolution|resolution]] 3.50&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[357d]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=357D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=357D FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.5&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HG:MERCURY+(II)+ION'>HG</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SSU:URIDINE-5-PHOSPHOROTHIOATE'>SSU</scene></td></tr>
{{STRUCTURE_357d|  PDB=357d |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=357d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=357d OCA], [https://pdbe.org/357d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=357d RCSB], [https://www.ebi.ac.uk/pdbsum/357d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=357d ProSAT]</span></td></tr>
 
</table>
'''3.5 A STRUCTURE OF FRAGMENT I FROM E. COLI 5S RRNA'''
__TOC__
 
</StructureSection>
 
[[Category: Escherichia coli]]
==Overview==
[[Category: Large Structures]]
Two new RNA structures portray how non-Watson-Crick base pairs and metal ions can produce a unique RNA shape suitable for recognition by proteins. The crystal structures of a 62 nt domain of E. coli 5S ribosomal RNA and a duplex dodecamer encompassing an internal loop E have been determined at 3.0 and 1.5 A, respectively. This loop E region is distorted by three "cross-strand purine stacks" and three novel, water-mediated noncanonical base pairs and stabilized by a four metal ion zipper. These features give its minor groove a unique hydrogen-bonding surface and make the adjacent major groove wide enough to permit recognition by the ribosomal protein L25, which is expected to bind to this surface.
[[Category: Correll CC]]
 
[[Category: Freeborn B]]
==About this Structure==
[[Category: Moore PB]]
Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=357D OCA].  
[[Category: Steitz TA]]
 
==Reference==
Metals, motifs, and recognition in the crystal structure of a 5S rRNA domain., Correll CC, Freeborn B, Moore PB, Steitz TA, Cell. 1997 Nov 28;91(5):705-12. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/9393863 9393863]
[[Category: Correll, C C.]]
[[Category: Freeborn, B.]]
[[Category: Moore, P B.]]
[[Category: Steitz, T A.]]
[[Category: Double helix]]
[[Category: Internal loop]]
[[Category: Kinked]]
[[Category: Mismatched]]
[[Category: Modified]]
[[Category: Overhanging base]]
[[Category: U-rna]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May  4 20:17:02 2008''

Latest revision as of 11:39, 7 February 2024

3.5 A structure of fragment I from E. coli 5S RRNA3.5 A structure of fragment I from E. coli 5S RRNA

Structural highlights

357d is a 3 chain structure with sequence from Escherichia coli. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 3.5Å
Ligands:, ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

357d, resolution 3.50Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
Retrieved from "https://proteopedia.openfox.io/wiki/index.php?title=357d&oldid=4047388"