1kdn: Difference between revisions

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{{Seed}}
[[Image:1kdn.png|left|200px]]


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==STRUCTURE OF NUCLEOSIDE DIPHOSPHATE KINASE==
The line below this paragraph, containing "STRUCTURE_1kdn", creates the "Structure Box" on the page.
<StructureSection load='1kdn' size='340' side='right'caption='[[1kdn]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1kdn]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Dictyostelium_discoideum Dictyostelium discoideum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KDN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1KDN FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=AF3:ALUMINUM+FLUORIDE'>AF3</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
{{STRUCTURE_1kdn|  PDB=1kdn |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1kdn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kdn OCA], [https://pdbe.org/1kdn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1kdn RCSB], [https://www.ebi.ac.uk/pdbsum/1kdn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1kdn ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/NDKC_DICDI NDKC_DICDI]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kd/1kdn_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1kdn ConSurf].
<div style="clear:both"></div>


===STRUCTURE OF NUCLEOSIDE DIPHOSPHATE KINASE===
==See Also==
 
*[[Nucleoside diphosphate kinase 3D structures|Nucleoside diphosphate kinase 3D structures]]
 
__TOC__
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</StructureSection>
The line below this paragraph, {{ABSTRACT_PUBMED_9108019}}, adds the Publication Abstract to the page
(as it appears on PubMed at http://www.pubmed.gov), where 9108019 is the PubMed ID number.
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{{ABSTRACT_PUBMED_9108019}}
 
==About this Structure==
1KDN is a 3 chains structure of sequences from [http://en.wikipedia.org/wiki/Dictyostelium_discoideum Dictyostelium discoideum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KDN OCA].
 
==Reference==
<ref group="xtra">PMID:9108019</ref><references group="xtra"/>
[[Category: Dictyostelium discoideum]]
[[Category: Dictyostelium discoideum]]
[[Category: Nucleoside-diphosphate kinase]]
[[Category: Large Structures]]
[[Category: Cherfils, J.]]
[[Category: Cherfils J]]
[[Category: Janin, J.]]
[[Category: Janin J]]
[[Category: Morera, S.]]
[[Category: Morera S]]
[[Category: Xu, Y W.]]
[[Category: Xu YW]]
[[Category: Atp-binding]]
[[Category: Kinase]]
[[Category: Phosphotransferase]]
[[Category: Transferase]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 17:49:10 2009''

Latest revision as of 10:46, 7 February 2024

STRUCTURE OF NUCLEOSIDE DIPHOSPHATE KINASESTRUCTURE OF NUCLEOSIDE DIPHOSPHATE KINASE

Structural highlights

1kdn is a 3 chain structure with sequence from Dictyostelium discoideum. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2Å
Ligands:, ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

NDKC_DICDI

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

1kdn, resolution 2.00Å

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OCA
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