1kdn: Difference between revisions

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-[[Image:1kdn.png|left|200px]]
-{{STRUCTURE_1kdn|  PDB=1kdn  |  SCENE=  }}
+==STRUCTURE OF NUCLEOSIDE DIPHOSPHATE KINASE==
+<StructureSection load='1kdn' size='340' side='right'caption='[[1kdn]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-===STRUCTURE OF NUCLEOSIDE DIPHOSPHATE KINASE===
+== Structural highlights ==
+<table><tr><td colspan='2'>[[1kdn]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Dictyostelium_discoideum Dictyostelium discoideum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KDN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1KDN FirstGlance]. <br>
-{{ABSTRACT_PUBMED_9108019}}
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=AF3:ALUMINUM+FLUORIDE'>AF3</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-==About this Structure==
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1kdn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kdn OCA], [https://pdbe.org/1kdn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1kdn RCSB], [https://www.ebi.ac.uk/pdbsum/1kdn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1kdn ProSAT]</span></td></tr>
-[[1kdn]] is a 3 chain structure of [[Nucleoside diphosphate kinase]] with sequence from [http://en.wikipedia.org/wiki/Dictyostelium_discoideum Dictyostelium discoideum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KDN OCA].
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/NDKC_DICDI NDKC_DICDI]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kd/1kdn_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1kdn ConSurf].
+<div style="clear:both"></div>
 ==See Also==
-*[[Nucleoside diphosphate kinase|Nucleoside diphosphate kinase]]
+*[[Nucleoside diphosphate kinase 3D structures|Nucleoside diphosphate kinase 3D structures]]
+__TOC__
-==Reference==
+</StructureSection>
-<ref group="xtra">PMID:009108019</ref><references group="xtra"/>
 [[Category: Dictyostelium discoideum]]
-[[Category: Nucleoside-diphosphate kinase]]
+[[Category: Large Structures]]
-[[Category: Cherfils, J.]]
+[[Category: Cherfils J]]
-[[Category: Janin, J.]]
+[[Category: Janin J]]
-[[Category: Morera, S.]]
+[[Category: Morera S]]
-[[Category: Xu, Y W.]]
+[[Category: Xu YW]]
-[[Category: Atp-binding]]
-[[Category: Kinase]]
-[[Category: Phosphotransferase]]
-[[Category: Transferase]]