1k6w: Difference between revisions

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[[Image:1k6w.png|left|200px]]


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==The Structure of Escherichia coli Cytosine Deaminase==
The line below this paragraph, containing "STRUCTURE_1k6w", creates the "Structure Box" on the page.
<StructureSection load='1k6w' size='340' side='right'caption='[[1k6w]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)  
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1k6w]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1K6W OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1K6W FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.75&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene></td></tr>
{{STRUCTURE_1k6w| PDB=1k6w |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1k6w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1k6w OCA], [https://pdbe.org/1k6w PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1k6w RCSB], [https://www.ebi.ac.uk/pdbsum/1k6w PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1k6w ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/CODA_ECOLI CODA_ECOLI]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/k6/1k6w_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1k6w ConSurf].
<div style="clear:both"></div>


===The Structure of Escherichia coli Cytosine Deaminase===
==See Also==
 
*[[Deaminase 3D structures|Deaminase 3D structures]]
 
__TOC__
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</StructureSection>
The line below this paragraph, {{ABSTRACT_PUBMED_11812140}}, adds the Publication Abstract to the page
(as it appears on PubMed at http://www.pubmed.gov), where 11812140 is the PubMed ID number.
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{{ABSTRACT_PUBMED_11812140}}
 
==About this Structure==
[[1k6w]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1K6W OCA].
 
==Reference==
<ref group="xtra">PMID:011812140</ref><references group="xtra"/>
[[Category: Cytosine deaminase]]
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
[[Category: Black, M E.]]
[[Category: Large Structures]]
[[Category: Ireton, G C.]]
[[Category: Black ME]]
[[Category: McDermott, G.]]
[[Category: Ireton GC]]
[[Category: Stoddard, B L.]]
[[Category: McDermott G]]
[[Category: Alpha-beta barrel]]
[[Category: Stoddard BL]]
[[Category: Cytosine deaminase]]
[[Category: Domain swap]]
[[Category: Hexamer]]
[[Category: Hydrolase]]

Latest revision as of 10:44, 7 February 2024

The Structure of Escherichia coli Cytosine DeaminaseThe Structure of Escherichia coli Cytosine Deaminase

Structural highlights

1k6w is a 1 chain structure with sequence from Escherichia coli. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.75Å
Ligands:
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

CODA_ECOLI

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

1k6w, resolution 1.75Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
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