1k6w: Difference between revisions

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-[[Image:1k6w.png|left|200px]]
-<!--
+==The Structure of Escherichia coli Cytosine Deaminase==
-The line below this paragraph, containing "STRUCTURE_1k6w", creates the "Structure Box" on the page.
+<StructureSection load='1k6w' size='340' side='right'caption='[[1k6w]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1k6w]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1K6W OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1K6W FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.75&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene></td></tr>
-{{STRUCTURE_1k6w|  PDB=1k6w  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1k6w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1k6w OCA], [https://pdbe.org/1k6w PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1k6w RCSB], [https://www.ebi.ac.uk/pdbsum/1k6w PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1k6w ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/CODA_ECOLI CODA_ECOLI]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/k6/1k6w_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1k6w ConSurf].
+<div style="clear:both"></div>
-===The Structure of Escherichia coli Cytosine Deaminase===
+==See Also==
+*[[Deaminase 3D structures|Deaminase 3D structures]]
+__TOC__
-<!--
+</StructureSection>
-The line below this paragraph, {{ABSTRACT_PUBMED_11812140}}, adds the Publication Abstract to the page
-(as it appears on PubMed at http://www.pubmed.gov), where 11812140 is the PubMed ID number.
--->
-{{ABSTRACT_PUBMED_11812140}}
-==About this Structure==
-[[1k6w]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1K6W OCA].
-==Reference==
-<ref group="xtra">PMID:011812140</ref><references group="xtra"/>
-[[Category: Cytosine deaminase]]
 [[Category: Escherichia coli]]
-[[Category: Black, M E.]]
+[[Category: Large Structures]]
-[[Category: Ireton, G C.]]
+[[Category: Black ME]]
-[[Category: McDermott, G.]]
+[[Category: Ireton GC]]
-[[Category: Stoddard, B L.]]
+[[Category: McDermott G]]
-[[Category: Alpha-beta barrel]]
+[[Category: Stoddard BL]]
-[[Category: Cytosine deaminase]]
-[[Category: Domain swap]]
-[[Category: Hexamer]]
-[[Category: Hydrolase]]