1jdb: Difference between revisions

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-{{Seed}}
-[[Image:1jdb.png|left|200px]]
-<!--
+==CARBAMOYL PHOSPHATE SYNTHETASE FROM ESCHERICHIA COLI==
-The line below this paragraph, containing "STRUCTURE_1jdb", creates the "Structure Box" on the page.
+<StructureSection load='1jdb' size='340' side='right'caption='[[1jdb]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1jdb]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JDB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1JDB FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GLN:GLUTAMINE'>GLN</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=NET:TETRAETHYLAMMONIUM+ION'>NET</scene>, <scene name='pdbligand=ORN:L-ORNITHINE'>ORN</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-{{STRUCTURE_1jdb|  PDB=1jdb  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1jdb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jdb OCA], [https://pdbe.org/1jdb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1jdb RCSB], [https://www.ebi.ac.uk/pdbsum/1jdb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1jdb ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/CARB_ECOLI CARB_ECOLI]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jd/1jdb_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1jdb ConSurf].
+<div style="clear:both"></div>
-===CARBAMOYL PHOSPHATE SYNTHETASE FROM ESCHERICHIA COLI===
+==See Also==
+*[[Carbamoyl phosphate synthetase 3D structures|Carbamoyl phosphate synthetase 3D structures]]
+__TOC__
-<!--
+</StructureSection>
-The line below this paragraph, {{ABSTRACT_PUBMED_10089390}}, adds the Publication Abstract to the page
-(as it appears on PubMed at http://www.pubmed.gov), where 10089390 is the PubMed ID number.
--->
-{{ABSTRACT_PUBMED_10089390}}
-==About this Structure==
-JDB is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JDB OCA].
-==Reference==
-The structure of carbamoyl phosphate synthetase determined to 2.1 A resolution., Thoden JB, Raushel FM, Benning MM, Rayment I, Holden HM, Acta Crystallogr D Biol Crystallogr. 1999 Jan;55(Pt 1):8-24. Epub 1999 Jan, 1. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/10089390 10089390]
 [[Category: Escherichia coli]]
-[[Category: Protein complex]]
+[[Category: Large Structures]]
-[[Category: Holden, H M.]]
+[[Category: Holden HM]]
-[[Category: Raushel, F M.]]
+[[Category: Raushel FM]]
-[[Category: Rayment, I.]]
+[[Category: Rayment I]]
-[[Category: Thoden, J B.]]
+[[Category: Thoden JB]]
-[[Category: Wesenberg, G.]]
+[[Category: Wesenberg G]]
-[[Category: Amidotransferase]]
-[[Category: Ligase]]
-[[Category: Synthase]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul  1 20:03:56 2008''