1j9m: Difference between revisions
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==K38H mutant of Streptomyces K15 DD-transpeptidase== | |||
<StructureSection load='1j9m' size='340' side='right'caption='[[1j9m]], [[Resolution|resolution]] 1.65Å' scene=''> | |||
== Structural highlights == | |||
<table><tr><td colspan='2'>[[1j9m]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_sp._K15 Streptomyces sp. K15]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1eqs 1eqs]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1J9M OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1J9M FirstGlance]. <br> | |||
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.65Å</td></tr> | |||
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr> | |||
== | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1j9m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1j9m OCA], [https://pdbe.org/1j9m PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1j9m RCSB], [https://www.ebi.ac.uk/pdbsum/1j9m PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1j9m ProSAT]</span></td></tr> | ||
[[1j9m]] is a 1 chain structure with sequence from [ | </table> | ||
== Function == | |||
[https://www.uniprot.org/uniprot/DACX_STRSK DACX_STRSK] Removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors. | |||
== Evolutionary Conservation == | |||
[[Image:Consurf_key_small.gif|200px|right]] | |||
Check<jmol> | |||
<jmolCheckbox> | |||
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/j9/1j9m_consurf.spt"</scriptWhenChecked> | |||
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | |||
<text>to colour the structure by Evolutionary Conservation</text> | |||
</jmolCheckbox> | |||
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1j9m ConSurf]. | |||
<div style="clear:both"></div> | |||
==See Also== | ==See Also== | ||
*[[Penicillin-binding protein|Penicillin-binding protein]] | *[[Carboxypeptidase 3D structures|Carboxypeptidase 3D structures]] | ||
*[[Penicillin-binding protein 3D structures|Penicillin-binding protein 3D structures]] | |||
__TOC__ | |||
< | </StructureSection> | ||
[[Category: | [[Category: Large Structures]] | ||
[[Category: Streptomyces sp.]] | [[Category: Streptomyces sp. K15]] | ||
[[Category: Charlier | [[Category: Charlier P]] | ||
[[Category: Fonze | [[Category: Fonze E]] | ||
[[Category: Nguyen-Disteche | [[Category: Nguyen-Disteche M]] | ||
[[Category: Rhazi | [[Category: Rhazi N]] | ||
Latest revision as of 10:38, 7 February 2024
K38H mutant of Streptomyces K15 DD-transpeptidaseK38H mutant of Streptomyces K15 DD-transpeptidase
Structural highlights
FunctionDACX_STRSK Removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors. Evolutionary Conservation Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf. See Also |
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