1ijw: Difference between revisions

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-{{Seed}}
-[[Image:1ijw.png|left|200px]]
-<!--
+==Testing the Water-Mediated Hin Recombinase DNA Recognition by Systematic Mutations.==
-The line below this paragraph, containing "STRUCTURE_1ijw", creates the "Structure Box" on the page.
+<StructureSection load='1ijw' size='340' side='right'caption='[[1ijw]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1ijw]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._LT2 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IJW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1IJW FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CBR:5-BROMO-2-DEOXY-CYTIDINE-5-MONOPHOSPHATE'>CBR</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
-{{STRUCTURE_1ijw|  PDB=1ijw  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ijw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ijw OCA], [https://pdbe.org/1ijw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ijw RCSB], [https://www.ebi.ac.uk/pdbsum/1ijw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ijw ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/HIN_SALTY HIN_SALTY] A DNA fragment of approximately 900 base pairs, adjacent to the fljB (H2) gene, which specifies the synthesis of phase-2 flagellin, can exist in either orientation with respect to fljB. The orientation of the inversion region controls expression of fljB. The hin gene occupies about two-thirds of the inversion region; it is required for the inversion of the fljB controlling region.
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ij/1ijw_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ijw ConSurf].
+<div style="clear:both"></div>
-===Testing the Water-Mediated Hin Recombinase DNA Recognition by Systematic Mutations.===
+==See Also==
+*[[Resolvase 3D structures|Resolvase 3D structures]]
+__TOC__
-<!--
+</StructureSection>
-The line below this paragraph, {{ABSTRACT_PUBMED_11847127}}, adds the Publication Abstract to the page
+[[Category: Large Structures]]
-(as it appears on PubMed at http://www.pubmed.gov), where 11847127 is the PubMed ID number.
+[[Category: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]]
--->
+[[Category: Chiu TK]]
-{{ABSTRACT_PUBMED_11847127}}
+[[Category: Dickerson RE]]
+[[Category: Johnson RC]]
-==About this Structure==
+[[Category: Sohn C]]
-IJW is a [[Single protein]] structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IJW OCA].
-==Reference==
-Testing water-mediated DNA recognition by the Hin recombinase., Chiu TK, Sohn C, Dickerson RE, Johnson RC, EMBO J. 2002 Feb 15;21(4):801-14. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/11847127 11847127]
-[[Category: Single protein]]
-[[Category: Chiu, T K.]]
-[[Category: Dickerson, R E.]]
-[[Category: Johnson, R C.]]
-[[Category: Sohn, C.]]
-[[Category: Br18]]
-[[Category: Hin recombinase]]
-[[Category: Protein-dna complex]]
-[[Category: Water-mediated recognition]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul  1 12:24:20 2008''