1hqm: Difference between revisions

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OCA

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-[[Image:1hqm.png|left|200px]]
-<!--
+==CRYSTAL STRUCTURE OF THERMUS AQUATICUS CORE RNA POLYMERASE-INCLUDES COMPLETE STRUCTURE WITH SIDE-CHAINS (EXCEPT FOR DISORDERED REGIONS)-FURTHER REFINED FROM ORIGINAL DEPOSITION-CONTAINS ADDITIONAL SEQUENCE INFORMATION==
-The line below this paragraph, containing "STRUCTURE_1hqm", creates the "Structure Box" on the page.
+<StructureSection load='1hqm' size='340' side='right'caption='[[1hqm]], [[Resolution|resolution]] 3.30&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1hqm]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_aquaticus Thermus aquaticus]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1ddq 1ddq]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1HQM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1HQM FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.3&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-{{STRUCTURE_1hqm|  PDB=1hqm  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1hqm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1hqm OCA], [https://pdbe.org/1hqm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1hqm RCSB], [https://www.ebi.ac.uk/pdbsum/1hqm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1hqm ProSAT]</span></td></tr>
+</table>
-===CRYSTAL STRUCTURE OF THERMUS AQUATICUS CORE RNA POLYMERASE-INCLUDES COMPLETE STRUCTURE WITH SIDE-CHAINS (EXCEPT FOR DISORDERED REGIONS)-FURTHER REFINED FROM ORIGINAL DEPOSITION-CONTAINS ADDITIONAL SEQUENCE INFORMATION===
+== Function ==
+[https://www.uniprot.org/uniprot/RPOA_THEAQ RPOA_THEAQ]
+== Evolutionary Conservation ==
-<!--
+[[Image:Consurf_key_small.gif|200px|right]]
-The line below this paragraph, {{ABSTRACT_PUBMED_11158566}}, adds the Publication Abstract to the page
+Check<jmol>
-(as it appears on PubMed at http://www.pubmed.gov), where 11158566 is the PubMed ID number.
+  <jmolCheckbox>
--->
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hq/1hqm_consurf.spt"</scriptWhenChecked>
-{{ABSTRACT_PUBMED_11158566}}
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
-==About this Structure==
+  </jmolCheckbox>
-[[1hqm]] is a 5 chain structure of [[RNA polymerase]] with sequence from [http://en.wikipedia.org/wiki/Thermus_aquaticus Thermus aquaticus]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1ddq 1ddq]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1HQM OCA].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1hqm ConSurf].
+<div style="clear:both"></div>
 ==See Also==
-*[[RNA polymerase]]
+*[[RNA polymerase 3D structures|RNA polymerase 3D structures]]
+__TOC__
-==Reference==
+</StructureSection>
-<ref group="xtra">PMID:011158566</ref><ref group="xtra">PMID:011893332</ref><references group="xtra"/>
+[[Category: Large Structures]]
-[[Category: DNA-directed RNA polymerase]]
 [[Category: Thermus aquaticus]]
-[[Category: Bhagat, S.]]
+[[Category: Bhagat S]]
-[[Category: Brunning, A.]]
+[[Category: Brunning A]]
-[[Category: Campbell, E A.]]
+[[Category: Campbell EA]]
-[[Category: Darst, S A.]]
+[[Category: Darst SA]]
-[[Category: Ebright, R H.]]
+[[Category: Ebright RH]]
-[[Category: Minakhin, L.]]
+[[Category: Minakhin L]]
-[[Category: Severinov, K.]]
+[[Category: Severinov K]]
-[[Category: Dna-directed rna polymerase]]
-[[Category: Transcription]]
-[[Category: Transferase]]