1hq0: Difference between revisions

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New page: left|200px<br /><applet load="1hq0" size="450" color="white" frame="true" align="right" spinBox="true" caption="1hq0, resolution 1.83Å" /> '''CRYSTAL STRUCTURE OF...
 
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[[Image:1hq0.jpg|left|200px]]<br /><applet load="1hq0" size="450" color="white" frame="true" align="right" spinBox="true"
caption="1hq0, resolution 1.83&Aring;" />
'''CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF E.COLI CYTOTOXIC NECROTIZING FACTOR TYPE 1'''<br />


==Overview==
==CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF E.COLI CYTOTOXIC NECROTIZING FACTOR TYPE 1==
Certain uropathogenic and neonatal meningitis-causing strains of, Escherichia coli express a 114 kDa protein toxin called cytotoxic, necrotizing factor 1 (CNF1). The toxin causes alteration of the host cell, actin cytoskeleton and promotes bacterial invasion of blood-brain barrier, endothelial cells. CNF1 belongs to a unique group of large cytotoxins that, cause constitutive activation of Rho guanosine triphosphatases (GTPases), which are key regulators of the actin cytoskeleton. This group also, includes E. coli cytotoxic necrotizing factor 2 (CNF2, 114 kDa) and, dermonecrotic toxins (DNT, 159 kDa) of Bordetella spp. with related, sequences occurring in Yersinia spp. Here we show that the catalytic, region of CNF1 exhibits a novel protein fold as determined by its 1.83 A, resolution crystal structure. The structure reveals that CNF1 has a, Cys-His-main chain oxygen catalytic triad reminiscent of enzymes belonging, to the catalytic triad superfamily. The position of the catalytic Cys, residue at the base of a deep pocket restricts access to potential, substrates and helps explain the high specificity of this and related, toxins.
<StructureSection load='1hq0' size='340' side='right'caption='[[1hq0]], [[Resolution|resolution]] 1.83&Aring;' scene=''>
 
== Structural highlights ==
==About this Structure==
<table><tr><td colspan='2'>[[1hq0]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1HQ0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1HQ0 FirstGlance]. <br>
1HQ0 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] with PO4 as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1HQ0 OCA].  
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.83&#8491;</td></tr>
 
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
==Reference==
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1hq0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1hq0 OCA], [https://pdbe.org/1hq0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1hq0 RCSB], [https://www.ebi.ac.uk/pdbsum/1hq0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1hq0 ProSAT]</span></td></tr>
Structure of the Rho-activating domain of Escherichia coli cytotoxic necrotizing factor 1., Buetow L, Flatau G, Chiu K, Boquet P, Ghosh P, Nat Struct Biol. 2001 Jul;8(7):584-8. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=11427886 11427886]
</table>
== Function ==
[https://www.uniprot.org/uniprot/Q47106_ECOLX Q47106_ECOLX]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hq/1hq0_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1hq0 ConSurf].
<div style="clear:both"></div>
__TOC__
</StructureSection>
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
[[Category: Single protein]]
[[Category: Large Structures]]
[[Category: Boquet, P.]]
[[Category: Boquet P]]
[[Category: Buetow, L.]]
[[Category: Buetow L]]
[[Category: Chiu, K.]]
[[Category: Chiu K]]
[[Category: Flatau, G.]]
[[Category: Flatau G]]
[[Category: Ghosh, P.]]
[[Category: Ghosh P]]
[[Category: PO4]]
[[Category: beta sandwich]]
[[Category: rho deamidase]]
[[Category: rho transglutaminase]]
 
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Sun Nov 25 02:54:20 2007''

Latest revision as of 10:29, 7 February 2024

CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF E.COLI CYTOTOXIC NECROTIZING FACTOR TYPE 1CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF E.COLI CYTOTOXIC NECROTIZING FACTOR TYPE 1

Structural highlights

1hq0 is a 1 chain structure with sequence from Escherichia coli. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.83Å
Ligands:
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

Q47106_ECOLX

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

1hq0, resolution 1.83Å

Drag the structure with the mouse to rotate

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OCA
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