1gdr: Difference between revisions

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-[[Image:1gdr.png|left|200px]]
-<!--
+==MODEL FOR A DNA MEDIATED SYNAPTIC COMPLEX SUGGESTED BY CRYSTAL PACKING OF GAMMA DELTA RESOLVASE SUBUNITS==
-The line below this paragraph, containing "STRUCTURE_1gdr", creates the "Structure Box" on the page.
+<StructureSection load='1gdr' size='340' side='right'caption='[[1gdr]], [[Resolution|resolution]] 3.50&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1gdr]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GDR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1GDR FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.5&#8491;</td></tr>
--->
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1gdr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gdr OCA], [https://pdbe.org/1gdr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1gdr RCSB], [https://www.ebi.ac.uk/pdbsum/1gdr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1gdr ProSAT]</span></td></tr>
-{{STRUCTURE_1gdr|  PDB=1gdr  |  SCENE=  }}
+</table>
+== Function ==
-===MODEL FOR A DNA MEDIATED SYNAPTIC COMPLEX SUGGESTED BY CRYSTAL PACKING OF GAMMA DELTA RESOLVASE SUBUNITS===
+[https://www.uniprot.org/uniprot/TNR1_ECOLI TNR1_ECOLI] This protein catalyzes the site-specific recombination of the transposon and also regulates its frequency of transposition.
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
-<!--
+Check<jmol>
-The line below this paragraph, {{ABSTRACT_PUBMED_8156989}}, adds the Publication Abstract to the page
+  <jmolCheckbox>
-(as it appears on PubMed at http://www.pubmed.gov), where 8156989 is the PubMed ID number.
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gd/1gdr_consurf.spt"</scriptWhenChecked>
--->
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-{{ABSTRACT_PUBMED_8156989}}
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
-==About this Structure==
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1gdr ConSurf].
-[[1gdr]] is a 1 chain structure of [[Resolvase]] with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GDR OCA].
+<div style="clear:both"></div>
 ==See Also==
-*[[Resolvase]]
+*[[Resolvase 3D structures|Resolvase 3D structures]]
+__TOC__
-==Reference==
+</StructureSection>
-<ref group="xtra">PMID:8156989</ref><references group="xtra"/>
 [[Category: Escherichia coli]]
-[[Category: Rice, P A.]]
+[[Category: Large Structures]]
-[[Category: Steitz, T A.]]
+[[Category: Rice PA]]
-[[Category: Site-specific recombinase]]
+[[Category: Steitz TA]]