1gdk: Difference between revisions

← Older edit

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-[[Image:1gdk.gif|left|200px]]
- {{Structure
+==CRYSTAL STRUCTURE OF FERRIC COMPLEXES OF THE YELLOW LUPIN LEGHEMOGLOBIN WITH ISOQUINOLINE AT 1.8 ANGSTROMS RESOLUTION (RUSSIAN)==
-|PDB= 1gdk |SIZE=350|CAPTION= <scene name='initialview01'>1gdk</scene>, resolution 1.8&Aring;
+<StructureSection load='1gdk' size='340' side='right'caption='[[1gdk]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-|SITE=
+== Structural highlights ==
-|LIGAND= <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=ISQ:ISOQUINOLINE'>ISQ</scene>
+<table><tr><td colspan='2'>[[1gdk]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Lupinus_luteus Lupinus luteus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GDK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1GDK FirstGlance]. <br>
-|ACTIVITY=
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-|GENE=
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=ISQ:ISOQUINOLINE'>ISQ</scene></td></tr>
-|DOMAIN=
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1gdk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gdk OCA], [https://pdbe.org/1gdk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1gdk RCSB], [https://www.ebi.ac.uk/pdbsum/1gdk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1gdk ProSAT]</span></td></tr>
-|RELATEDENTRY=
+</table>
-|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1gdk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gdk OCA], [http://www.ebi.ac.uk/pdbsum/1gdk PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1gdk RCSB]</span>
+== Function ==
-}}
+[https://www.uniprot.org/uniprot/LGB2_LUPLU LGB2_LUPLU] Provides oxygen to the bacteroids. This role is essential for symbiotic nitrogen fixation.
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gd/1gdk_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1gdk ConSurf].
+<div style="clear:both"></div>
-'''CRYSTAL STRUCTURE OF FERRIC COMPLEXES OF THE YELLOW LUPIN LEGHEMOGLOBIN WITH ISOQUINOLINE AT 1.8 ANGSTROMS RESOLUTION (RUSSIAN)'''
+==See Also==
+*[[Hemoglobin 3D structures|Hemoglobin 3D structures]]
+__TOC__
-==About this Structure==
+</StructureSection>
-GDK is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Lupinus_luteus Lupinus luteus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GDK OCA].
+[[Category: Large Structures]]
 [[Category: Lupinus luteus]]
-[[Category: Single protein]]
+[[Category: Harutyunyan E]]
-[[Category: Harutyunyan, E.]]
+[[Category: Kuranova I]]
-[[Category: Kuranova, I.]]
+[[Category: Safonova T]]
-[[Category: Safonova, T.]]
-[[Category: oxygen transport]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 20:42:02 2008''