1gdh: Difference between revisions

← Older edit

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-{{Seed}}
-[[Image:1gdh.png|left|200px]]
-<!--
+==CRYSTAL STRUCTURE OF A NAD-DEPENDENT D-GLYCERATE DEHYDROGENASE AT 2.4 ANGSTROMS RESOLUTION==
-The line below this paragraph, containing "STRUCTURE_1gdh", creates the "Structure Box" on the page.
+<StructureSection load='1gdh' size='340' side='right'caption='[[1gdh]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1gdh]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Hyphomicrobium_methylovorum Hyphomicrobium methylovorum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GDH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1GDH FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-{{STRUCTURE_1gdh|  PDB=1gdh  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1gdh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gdh OCA], [https://pdbe.org/1gdh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1gdh RCSB], [https://www.ebi.ac.uk/pdbsum/1gdh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1gdh ProSAT]</span></td></tr>
+</table>
-===CRYSTAL STRUCTURE OF A NAD-DEPENDENT D-GLYCERATE DEHYDROGENASE AT 2.4 ANGSTROMS RESOLUTION===
+== Function ==
+[https://www.uniprot.org/uniprot/DHGY_HYPME DHGY_HYPME] Active on hydroxypyruvate and glyoxylate.
+== Evolutionary Conservation ==
-<!--
+[[Image:Consurf_key_small.gif|200px|right]]
-The line below this paragraph, {{ABSTRACT_PUBMED_8120891}}, adds the Publication Abstract to the page
+Check<jmol>
-(as it appears on PubMed at http://www.pubmed.gov), where 8120891 is the PubMed ID number.
+  <jmolCheckbox>
--->
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gd/1gdh_consurf.spt"</scriptWhenChecked>
-{{ABSTRACT_PUBMED_8120891}}
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
-==About this Structure==
+  </jmolCheckbox>
-GDH is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Hyphomicrobium_methylovorum Hyphomicrobium methylovorum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GDH OCA].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1gdh ConSurf].
+<div style="clear:both"></div>
-==Reference==
+__TOC__
-<ref group="xtra">PMID:8120891</ref><references group="xtra"/>
+</StructureSection>
-[[Category: Glycerate dehydrogenase]]
 [[Category: Hyphomicrobium methylovorum]]
-[[Category: Brick, P.]]
+[[Category: Large Structures]]
-[[Category: Goldberg, J D.]]
+[[Category: Brick P]]
-[[Category: Yoshida, T.]]
+[[Category: Goldberg JD]]
+[[Category: Yoshida T]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 18:52:58 2009''