1fg0: Difference between revisions

From Proteopedia
Jump to navigation Jump to search
← Older edit
No edit summary
No edit summary
 
(15 intermediate revisions by the same user not shown)
Line 1: Line 1:
[[Image:1fg0.gif|left|200px]]


{{Structure
==LARGE RIBOSOMAL SUBUNIT COMPLEXED WITH A 13 BP MINIHELIX-PUROMYCIN COMPOUND==
|PDB= 1fg0 |SIZE=350|CAPTION= <scene name='initialview01'>1fg0</scene>, resolution 3.00&Aring;
<StructureSection load='1fg0' size='340' side='right'caption='[[1fg0]], [[Resolution|resolution]] 3.00&Aring;' scene=''>
|SITE=  
== Structural highlights ==
|LIGAND=  
<table><tr><td colspan='2'>[[1fg0]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Haloarcula_marismortui Haloarcula marismortui] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FG0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1FG0 FirstGlance]. <br>
|ACTIVITY=  
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3&#8491;</td></tr>
|GENE=  
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PPU:PUROMYCIN-5-MONOPHOSPHATE'>PPU</scene></td></tr>
}}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1fg0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1fg0 OCA], [https://pdbe.org/1fg0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1fg0 RCSB], [https://www.ebi.ac.uk/pdbsum/1fg0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1fg0 ProSAT]</span></td></tr>
</table>


'''LARGE RIBOSOMAL SUBUNIT COMPLEXED WITH A 13 BP MINIHELIX-PUROMYCIN COMPOUND'''
==See Also==
 
*[[Large Ribosomal Subunit of Haloarcula|Large Ribosomal Subunit of Haloarcula]]
 
*[[Ribosome|Ribosome]]
==Overview==
__TOC__
Using the atomic structures of the large ribosomal subunit from Haloarcula marismortui and its complexes with two substrate analogs, we establish that the ribosome is a ribozyme and address the catalytic properties of its all-RNA active site. Both substrate analogs are contacted exclusively by conserved ribosomal RNA (rRNA) residues from domain V of 23S rRNA; there are no protein side-chain atoms closer than about 18 angstroms to the peptide bond being synthesized. The mechanism of peptide bond synthesis appears to resemble the reverse of the acylation step in serine proteases, with the base of A2486 (A2451 in Escherichia coli) playing the same general base role as histidine-57 in chymotrypsin. The unusual pK(a) (where K(a) is the acid dissociation constant) required for A2486 to perform this function may derive in part from its hydrogen bonding to G2482 (G2447 in E. coli), which also interacts with a buried phosphate that could stabilize unusual tautomers of these two bases. The polypeptide exit tunnel is largely formed by RNA but has significant contributions from proteins L4, L22, and L39e, and its exit is encircled by proteins L19, L22, L23, L24, L29, and L31e.
</StructureSection>
 
==About this Structure==
1FG0 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Haloarcula_marismortui Haloarcula marismortui]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FG0 OCA].
 
==Reference==
The structural basis of ribosome activity in peptide bond synthesis., Nissen P, Hansen J, Ban N, Moore PB, Steitz TA, Science. 2000 Aug 11;289(5481):920-30. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/10937990 10937990]
[[Category: Haloarcula marismortui]]
[[Category: Haloarcula marismortui]]
[[Category: Single protein]]
[[Category: Large Structures]]
[[Category: Ban, N.]]
[[Category: Synthetic construct]]
[[Category: Hansen, J.]]
[[Category: Ban N]]
[[Category: Moore, P B.]]
[[Category: Hansen J]]
[[Category: Nissen, P.]]
[[Category: Moore PB]]
[[Category: Steitz, T A.]]
[[Category: Nissen P]]
[[Category: a-site]]
[[Category: Steitz TA]]
[[Category: ribosome assembly]]
[[Category: ribozyme]]
[[Category: rna-rna]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 11:08:35 2008''

Latest revision as of 10:14, 7 February 2024

LARGE RIBOSOMAL SUBUNIT COMPLEXED WITH A 13 BP MINIHELIX-PUROMYCIN COMPOUNDLARGE RIBOSOMAL SUBUNIT COMPLEXED WITH A 13 BP MINIHELIX-PUROMYCIN COMPOUND

Structural highlights

1fg0 is a 2 chain structure with sequence from Haloarcula marismortui and Synthetic construct. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 3Å
Ligands:
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

See Also

1fg0, resolution 3.00Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
Retrieved from "https://proteopedia.openfox.io/wiki/index.php?title=1fg0&oldid=4043459"