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==LARGE RIBOSOMAL SUBUNIT COMPLEXED WITH R(CC)-DA-PUROMYCIN==
==LARGE RIBOSOMAL SUBUNIT COMPLEXED WITH R(CC)-DA-PUROMYCIN==
<StructureSection load='1ffz' size='340' side='right' caption='[[1ffz]], [[Resolution|resolution]] 3.20&Aring;' scene=''>
<StructureSection load='1ffz' size='340' side='right'caption='[[1ffz]], [[Resolution|resolution]] 3.20&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[1ffz]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Haloarcula_marismortui Haloarcula marismortui]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FFZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1FFZ FirstGlance]. <br>
<table><tr><td colspan='2'>[[1ffz]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Haloarcula_marismortui Haloarcula marismortui] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FFZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1FFZ FirstGlance]. <br>
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PU:PUROMYCIN-N-AMINOPHOSPHONIC+ACID'>PU</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.2&#8491;</td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1ffk|1ffk]], [[1fg0|1fg0]]</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PU:PUROMYCIN-N-AMINOPHOSPHONIC+ACID'>PU</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ffz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ffz OCA], [http://pdbe.org/1ffz PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1ffz RCSB], [http://www.ebi.ac.uk/pdbsum/1ffz PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1ffz ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ffz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ffz OCA], [https://pdbe.org/1ffz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ffz RCSB], [https://www.ebi.ac.uk/pdbsum/1ffz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ffz ProSAT]</span></td></tr>
</table>
</table>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Using the atomic structures of the large ribosomal subunit from Haloarcula marismortui and its complexes with two substrate analogs, we establish that the ribosome is a ribozyme and address the catalytic properties of its all-RNA active site. Both substrate analogs are contacted exclusively by conserved ribosomal RNA (rRNA) residues from domain V of 23S rRNA; there are no protein side-chain atoms closer than about 18 angstroms to the peptide bond being synthesized. The mechanism of peptide bond synthesis appears to resemble the reverse of the acylation step in serine proteases, with the base of A2486 (A2451 in Escherichia coli) playing the same general base role as histidine-57 in chymotrypsin. The unusual pK(a) (where K(a) is the acid dissociation constant) required for A2486 to perform this function may derive in part from its hydrogen bonding to G2482 (G2447 in E. coli), which also interacts with a buried phosphate that could stabilize unusual tautomers of these two bases. The polypeptide exit tunnel is largely formed by RNA but has significant contributions from proteins L4, L22, and L39e, and its exit is encircled by proteins L19, L22, L23, L24, L29, and L31e.
The structural basis of ribosome activity in peptide bond synthesis.,Nissen P, Hansen J, Ban N, Moore PB, Steitz TA Science. 2000 Aug 11;289(5481):920-30. PMID:10937990<ref>PMID:10937990</ref>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 1ffz" style="background-color:#fffaf0;"></div>


==See Also==
==See Also==
*[[Large Ribosomal Subunit of Haloarcula|Large Ribosomal Subunit of Haloarcula]]
*[[Large Ribosomal Subunit of Haloarcula|Large Ribosomal Subunit of Haloarcula]]
*[[Ribosome|Ribosome]]
*[[Ribosome|Ribosome]]
*[[User:Wayne Decatur/Haloarcula Large Ribosomal Subunit|User:Wayne Decatur/Haloarcula Large Ribosomal Subunit]]
== References ==
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Haloarcula marismortui]]
[[Category: Haloarcula marismortui]]
[[Category: Ban, N]]
[[Category: Large Structures]]
[[Category: Hansen, J]]
[[Category: Synthetic construct]]
[[Category: Moore, P B]]
[[Category: Ban N]]
[[Category: Nissen, P]]
[[Category: Hansen J]]
[[Category: Steitz, T A]]
[[Category: Moore PB]]
[[Category: Ribosomal rna]]
[[Category: Nissen P]]
[[Category: Ribosome]]
[[Category: Steitz TA]]
[[Category: Ribosome assembly]]
[[Category: Ribozyme]]
[[Category: Rna-rna complex]]

Latest revision as of 10:14, 7 February 2024

LARGE RIBOSOMAL SUBUNIT COMPLEXED WITH R(CC)-DA-PUROMYCINLARGE RIBOSOMAL SUBUNIT COMPLEXED WITH R(CC)-DA-PUROMYCIN

Structural highlights

1ffz is a 2 chain structure with sequence from Haloarcula marismortui and Synthetic construct. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 3.2Å
Ligands:
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

See Also

1ffz, resolution 3.20Å

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