1fdi: Difference between revisions

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-{{Seed}}
-[[Image:1fdi.png|left|200px]]
-<!--
+==OXIDIZED FORM OF FORMATE DEHYDROGENASE H FROM E. COLI COMPLEXED WITH THE INHIBITOR NITRITE==
-The line below this paragraph, containing "STRUCTURE_1fdi", creates the "Structure Box" on the page.
+<StructureSection load='1fdi' size='340' side='right'caption='[[1fdi]], [[Resolution|resolution]] 2.90&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1fdi]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FDI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1FDI FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.9&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=6MO:MOLYBDENUM(VI)+ION'>6MO</scene>, <scene name='pdbligand=MGD:2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE+GUANOSINE+DINUCLEOTIDE'>MGD</scene>, <scene name='pdbligand=NO2:NITRITE+ION'>NO2</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr>
-{{STRUCTURE_1fdi|  PDB=1fdi  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1fdi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1fdi OCA], [https://pdbe.org/1fdi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1fdi RCSB], [https://www.ebi.ac.uk/pdbsum/1fdi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1fdi ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/FDHF_ECOLI FDHF_ECOLI] Decomposes formic acid to hydrogen and carbon dioxide under anaerobic conditions in the absence of exogenous electron acceptors.
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fd/1fdi_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1fdi ConSurf].
+<div style="clear:both"></div>
-===OXIDIZED FORM OF FORMATE DEHYDROGENASE H FROM E. COLI COMPLEXED WITH THE INHIBITOR NITRITE===
+==See Also==
+*[[Formate dehydrogenase 3D structures|Formate dehydrogenase 3D structures]]
+__TOC__
-<!--
+</StructureSection>
-The line below this paragraph, {{ABSTRACT_PUBMED_9036855}}, adds the Publication Abstract to the page
-(as it appears on PubMed at http://www.pubmed.gov), where 9036855 is the PubMed ID number.
--->
-{{ABSTRACT_PUBMED_9036855}}
-==About this Structure==
-FDI is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FDI OCA].
-==Reference==
-<ref group="xtra">PMID:9036855</ref><references group="xtra"/>
 [[Category: Escherichia coli]]
-[[Category: Formate dehydrogenase]]
+[[Category: Large Structures]]
-[[Category: Boyington, J C.]]
+[[Category: Boyington JC]]
-[[Category: Sun, P D.]]
+[[Category: Sun PD]]
-[[Category: Anaerobic]]
-[[Category: Dehydrogenase]]
-[[Category: Fe4s4]]
-[[Category: Formate]]
-[[Category: Iron sulfur cluster]]
-[[Category: Mgd]]
-[[Category: Molybdenum]]
-[[Category: Molybdopterin]]
-[[Category: Molybdopterin guanine dinucleotide]]
-[[Category: Mpt]]
-[[Category: Oxidoreductase]]
-[[Category: Secy]]
-[[Category: Selenium]]
-[[Category: Selenocysteine]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 14:53:12 2009''