1f5c: Difference between revisions

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-[[Image:1f5c.png|left|200px]]
-<!--
+==CRYSTAL STRUCTURE OF F25H FERREDOXIN 1 MUTANT FROM AZOTOBACTER VINELANDII AT 1.75 ANGSTROM RESOLUTION==
-The line below this paragraph, containing "STRUCTURE_1f5c", creates the "Structure Box" on the page.
+<StructureSection load='1f5c' size='340' side='right'caption='[[1f5c]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1f5c]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Azotobacter_vinelandii Azotobacter vinelandii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1F5C OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1F5C FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.75&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=F3S:FE3-S4+CLUSTER'>F3S</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-{{STRUCTURE_1f5c|  PDB=1f5c  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1f5c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1f5c OCA], [https://pdbe.org/1f5c PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1f5c RCSB], [https://www.ebi.ac.uk/pdbsum/1f5c PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1f5c ProSAT]</span></td></tr>
+</table>
-===CRYSTAL STRUCTURE OF F25H FERREDOXIN 1 MUTANT FROM AZOTOBACTER VINELANDII AT 1.75 ANGSTROM RESOLUTION===
+== Function ==
+[https://www.uniprot.org/uniprot/FER1_AZOVI FER1_AZOVI] Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. This ferredoxin could play a role in regulating gene expression by interacting directly with DNA.
+== Evolutionary Conservation ==
-<!--
+[[Image:Consurf_key_small.gif|200px|right]]
-The line below this paragraph, {{ABSTRACT_PUBMED_11875515}}, adds the Publication Abstract to the page
+Check<jmol>
-(as it appears on PubMed at http://www.pubmed.gov), where 11875515 is the PubMed ID number.
+  <jmolCheckbox>
--->
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/f5/1f5c_consurf.spt"</scriptWhenChecked>
-{{ABSTRACT_PUBMED_11875515}}
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
-==About this Structure==
+  </jmolCheckbox>
-[[1f5c]] is a 1 chain structure of [[Ferredoxin]] with sequence from [http://en.wikipedia.org/wiki/Azotobacter_vinelandii Azotobacter vinelandii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1F5C OCA].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1f5c ConSurf].
+<div style="clear:both"></div>
 ==See Also==
-*[[Ferredoxin]]
+*[[Ferredoxin 3D structures|Ferredoxin 3D structures]]
+__TOC__
-==Reference==
+</StructureSection>
-<ref group="xtra">PMID:11875515</ref><references group="xtra"/>
 [[Category: Azotobacter vinelandii]]
-[[Category: Armstrong, F A.]]
+[[Category: Large Structures]]
-[[Category: Bonagura, C A.]]
+[[Category: Armstrong FA]]
-[[Category: Burgess, B K.]]
+[[Category: Bonagura CA]]
-[[Category: Chen, K.]]
+[[Category: Burgess BK]]
-[[Category: Jung, Y S.]]
+[[Category: Chen K]]
-[[Category: Stout, C D.]]
+[[Category: Jung YS]]
-[[Category: Tilley, G J.]]
+[[Category: Stout CD]]
-[[Category: Beta-sheet]]
+[[Category: Tilley GJ]]
-[[Category: Electron transport]]
-[[Category: Ferredoxin]]
-[[Category: Iron sulfur protein]]
-[[Category: Protein monomer]]