1enr: Difference between revisions

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New page: left|200px<br /><applet load="1enr" size="450" color="white" frame="true" align="right" spinBox="true" caption="1enr, resolution 1.83Å" /> '''CO-CRYSTALS OF DEMET...
 
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[[Image:1enr.jpg|left|200px]]<br /><applet load="1enr" size="450" color="white" frame="true" align="right" spinBox="true"
caption="1enr, resolution 1.83&Aring;" />
'''CO-CRYSTALS OF DEMETALLIZED CONCANAVALIN A WITH ZINC AND CALCIUM HAVING A ZINC ION BOUND IN THE S1 SITE AND A CALCIUM ION BOUND IN THE S2 SITE'''<br />


==Overview==
==CO-CRYSTALS OF DEMETALLIZED CONCANAVALIN A WITH ZINC AND CALCIUM HAVING A ZINC ION BOUND IN THE S1 SITE AND A CALCIUM ION BOUND IN THE S2 SITE==
The lectin concanavalin A (ConA) sequentially binds a transition metal ion, in the metal-binding site S1 and a calcium ion in the metal-binding site, S2 to form its saccharide-binding site. Metal-free ConA crystals soaked, with either Zn2+ (apoZn-ConA) or Co2+ (apoCo-ConA) display partial binding, of these ions in the proto-transition metal-binding site, but no further, conformational changes are observed. These structures can represent the, very first step in going from metal-free ConA toward the holoprotein. In, the co-crystals of metal-free ConA with Zn2+ (Zn-ConA), the zinc ion can, fully occupy the S1 site. The positions of the carboxylate ligands Asp10, and Asp19 that bridge the S1 and S2 sites are affected. The ligation to, Zn2+ orients Asp10 optimally for calcium ligation and stabilizes Asp19 by, a hydrogen bond to one of its water ligands. The neutralizing and, stabilizing effect of the binding of Zn2+ in S1 is necessary to allow for, subsequent Ca2+ binding in the S2 site. However, the S2 site of, monometallized ConA is still disrupted. The co-crystals of metal-free ConA, with both Zn2+ and Ca2+ contain the active holoprotein (ConA ZnCa). Ca2+, has induced large conformational changes to stabilize its, hepta-coordination in the S2 site, which comprise the trans to cis, isomerization of the Ala207-Asp208 peptide bond accompanied by the, formation of the saccharide-binding site. The Zn2+ ligation in ConA ZnCa, is similar to Mn2+, Cd2+, Co2+, or Ni2+ ligation in the S1 site, in, disagreement with earlier extended x-ray absorption fine structure results, that suggested a lower coordination number for Zn2+.
<StructureSection load='1enr' size='340' side='right'caption='[[1enr]], [[Resolution|resolution]] 1.83&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[1enr]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Canavalia_ensiformis Canavalia ensiformis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ENR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ENR FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.83&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1enr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1enr OCA], [https://pdbe.org/1enr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1enr RCSB], [https://www.ebi.ac.uk/pdbsum/1enr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1enr ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/CONA_CANEN CONA_CANEN] D-mannose specific lectin.
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/en/1enr_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1enr ConSurf].
<div style="clear:both"></div>


==About this Structure==
==See Also==
1ENR is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Canavalia_ensiformis Canavalia ensiformis] with CA and ZN as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1ENR OCA].
*[[Concanavalin 3D structures|Concanavalin 3D structures]]
 
__TOC__
==Reference==
</StructureSection>
Sequential structural changes upon zinc and calcium binding to metal-free concanavalin A., Bouckaert J, Poortmans F, Wyns L, Loris R, J Biol Chem. 1996 Jul 5;271(27):16144-50. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=8663112 8663112]
[[Category: Canavalia ensiformis]]
[[Category: Canavalia ensiformis]]
[[Category: Single protein]]
[[Category: Large Structures]]
[[Category: Bouckaert, J.]]
[[Category: Bouckaert J]]
[[Category: Loris, R.]]
[[Category: Loris R]]
[[Category: Poortmans, F.]]
[[Category: Poortmans F]]
[[Category: Wyns, L.]]
[[Category: Wyns L]]
[[Category: CA]]
[[Category: ZN]]
[[Category: agglutinin]]
[[Category: calcium]]
[[Category: concanavalin a]]
[[Category: plant lectin]]
[[Category: zinc]]
 
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Nov 20 14:09:28 2007''

Latest revision as of 10:05, 7 February 2024

CO-CRYSTALS OF DEMETALLIZED CONCANAVALIN A WITH ZINC AND CALCIUM HAVING A ZINC ION BOUND IN THE S1 SITE AND A CALCIUM ION BOUND IN THE S2 SITECO-CRYSTALS OF DEMETALLIZED CONCANAVALIN A WITH ZINC AND CALCIUM HAVING A ZINC ION BOUND IN THE S1 SITE AND A CALCIUM ION BOUND IN THE S2 SITE

Structural highlights

1enr is a 1 chain structure with sequence from Canavalia ensiformis. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.83Å
Ligands:,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

CONA_CANEN D-mannose specific lectin.

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

1enr, resolution 1.83Å

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