1ei7: Difference between revisions

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-{{Seed}}
-[[Image:1ei7.png|left|200px]]
-<!--
+==TMV COAT PROTEIN REFINED FROM THE 4-LAYER AGGREGATE==
-The line below this paragraph, containing "STRUCTURE_1ei7", creates the "Structure Box" on the page.
+<StructureSection load='1ei7' size='340' side='right'caption='[[1ei7]], [[Resolution|resolution]] 2.45&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1ei7]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Tobacco_mosaic_virus Tobacco mosaic virus]. The January 2009 RCSB PDB [https://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''Tobacco Mosaic Virus''  by David Goodsell is [https://dx.doi.org/10.2210/rcsb_pdb/mom_2009_1 10.2210/rcsb_pdb/mom_2009_1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1EI7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1EI7 FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.45&#8491;</td></tr>
--->
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ei7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ei7 OCA], [https://pdbe.org/1ei7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ei7 RCSB], [https://www.ebi.ac.uk/pdbsum/1ei7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ei7 ProSAT]</span></td></tr>
-{{STRUCTURE_1ei7|  PDB=1ei7  |  SCENE=  }}
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/CAPSD_TMV CAPSD_TMV] Capsid protein self-assembles to form rod-shaped virions about 18 nm in diameter with a central canal enclosing the viral genomic RNA.
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ei/1ei7_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ei7 ConSurf].
+<div style="clear:both"></div>
-===TMV COAT PROTEIN REFINED FROM THE 4-LAYER AGGREGATE===
+==See Also==
+*[[Tobacco Mosaic Virus|Tobacco Mosaic Virus]]
+*[[Virus coat proteins 3D structures|Virus coat proteins 3D structures]]
-<!--
+__TOC__
-The line below this paragraph, {{ABSTRACT_PUBMED_9449361}}, adds the Publication Abstract to the page
+</StructureSection>
-(as it appears on PubMed at http://www.pubmed.gov), where 9449361 is the PubMed ID number.
+[[Category: Large Structures]]
--->
+[[Category: RCSB PDB Molecule of the Month]]
-{{ABSTRACT_PUBMED_9449361}}
+[[Category: Tobacco Mosaic Virus]]
-==About this Structure==
-EI7 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Tobacco_mosaic_virus Tobacco mosaic virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1EI7 OCA].
-==Reference==
-Refined atomic model of the four-layer aggregate of the tobacco mosaic virus coat protein at 2.4-A resolution., Bhyravbhatla B, Watowich SJ, Caspar DL, Biophys J. 1998 Jan;74(1):604-15. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/9449361 9449361]
-[[Category: Single protein]]
 [[Category: Tobacco mosaic virus]]
-[[Category: Bhyravbhatla, B.]]
+[[Category: Bhyravbhatla B]]
-[[Category: Caspar, D L.]]
+[[Category: Caspar DL]]
-[[Category: Watowich, S J.]]
+[[Category: Watowich SJ]]
-[[Category: Disordered loop]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul  1 00:44:22 2008''