1dvo: Difference between revisions

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-{{Seed}}
-[[Image:1dvo.png|left|200px]]
-<!--
+==THE X-RAY CRYSTAL STRUCTURE OF FINO, A REPRESSOR OF BACTERIAL CONJUGATION==
-The line below this paragraph, containing "STRUCTURE_1dvo", creates the "Structure Box" on the page.
+<StructureSection load='1dvo' size='340' side='right'caption='[[1dvo]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1dvo]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DVO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DVO FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
--->
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1dvo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dvo OCA], [https://pdbe.org/1dvo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1dvo RCSB], [https://www.ebi.ac.uk/pdbsum/1dvo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1dvo ProSAT]</span></td></tr>
-{{STRUCTURE_1dvo|  PDB=1dvo  |  SCENE=  }}
+</table>
+== Function ==
-===THE X-RAY CRYSTAL STRUCTURE OF FINO, A REPRESSOR OF BACTERIAL CONJUGATION===
+[https://www.uniprot.org/uniprot/FINO3_ECOLX FINO3_ECOLX] One of the components on the FinOP fertility inhibition complex, which inhibits the expression of traJ gene, which in turn regulates the expression of some 20 transfer genes. The transfer genes are responsible for the process, called conjugal transfer, in which DNA is transmitted from one bacterial host to another. RNA-binding that interacts with the traJ mRNA and its antisense RNA, finP, stabilizing finP against endonucleolytic degradation and facilitating sense-antisense RNA recognition (By similarity).
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
-<!--
+Check<jmol>
-The line below this paragraph, {{ABSTRACT_PUBMED_10876242}}, adds the Publication Abstract to the page
+  <jmolCheckbox>
-(as it appears on PubMed at http://www.pubmed.gov), where 10876242 is the PubMed ID number.
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dv/1dvo_consurf.spt"</scriptWhenChecked>
--->
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-{{ABSTRACT_PUBMED_10876242}}
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
-==About this Structure==
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1dvo ConSurf].
-DVO is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DVO OCA].
+<div style="clear:both"></div>
+__TOC__
-==Reference==
+</StructureSection>
-<ref group="xtra">PMID:10876242</ref><references group="xtra"/>
 [[Category: Escherichia coli]]
-[[Category: Frost, L S.]]
+[[Category: Large Structures]]
-[[Category: Ghetu, A F.]]
+[[Category: Frost LS]]
-[[Category: Glover, J N.M.]]
+[[Category: Ghetu AF]]
-[[Category: Gubbins, M J.]]
+[[Category: Glover JNM]]
-[[Category: Bacterial conjugation]]
+[[Category: Gubbins MJ]]
-[[Category: Repressor]]
-[[Category: X-ray crystallography]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 18:58:22 2009''