1duk: Difference between revisions

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[[Image:1duk.png|left|200px]]


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==WILD-TYPE RECOMBINANT SPERM WHALE METAQUOMYOGLOBIN==
The line below this paragraph, containing "STRUCTURE_1duk", creates the "Structure Box" on the page.
<StructureSection load='1duk' size='340' side='right'caption='[[1duk]], [[Resolution|resolution]] 2.13&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1duk]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Physeter_catodon Physeter catodon]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DUK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DUK FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.13&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
{{STRUCTURE_1duk|  PDB=1duk  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1duk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1duk OCA], [https://pdbe.org/1duk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1duk RCSB], [https://www.ebi.ac.uk/pdbsum/1duk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1duk ProSAT]</span></td></tr>
 
</table>
===WILD-TYPE RECOMBINANT SPERM WHALE METAQUOMYOGLOBIN===
== Function ==
 
[https://www.uniprot.org/uniprot/MYG_PHYMC MYG_PHYMC] Serves as a reserve supply of oxygen and facilitates the movement of oxygen within muscles.
 
== Evolutionary Conservation ==
<!--
[[Image:Consurf_key_small.gif|200px|right]]
The line below this paragraph, {{ABSTRACT_PUBMED_10813811}}, adds the Publication Abstract to the page
Check<jmol>
(as it appears on PubMed at http://www.pubmed.gov), where 10813811 is the PubMed ID number.
  <jmolCheckbox>
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    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/du/1duk_consurf.spt"</scriptWhenChecked>
{{ABSTRACT_PUBMED_10813811}}
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 
    <text>to colour the structure by Evolutionary Conservation</text>
==About this Structure==
  </jmolCheckbox>
[[1duk]] is a 1 chain structure of [[Myoglobin]] with sequence from [http://en.wikipedia.org/wiki/Physeter_catodon Physeter catodon]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DUK OCA].  
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1duk ConSurf].
<div style="clear:both"></div>


==See Also==
==See Also==
*[[Myoglobin]]
*[[Hemoglobin 3D structures|Hemoglobin 3D structures]]
 
*[[Myoglobin 3D structures|Myoglobin 3D structures]]
==Reference==
__TOC__
<ref group="xtra">PMID:10813811</ref><references group="xtra"/>
</StructureSection>
[[Category: Large Structures]]
[[Category: Physeter catodon]]
[[Category: Physeter catodon]]
[[Category: Barrick, D.]]
[[Category: Barrick D]]
[[Category: Dahlquist, F W.]]
[[Category: Dahlquist FW]]
[[Category: Heme protein]]
[[Category: Myoglobin]]
[[Category: Oxygen storage/transport complex]]
[[Category: Oxygen-storage protein]]

Latest revision as of 09:59, 7 February 2024

WILD-TYPE RECOMBINANT SPERM WHALE METAQUOMYOGLOBINWILD-TYPE RECOMBINANT SPERM WHALE METAQUOMYOGLOBIN

Structural highlights

1duk is a 1 chain structure with sequence from Physeter catodon. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.13Å
Ligands:
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

MYG_PHYMC Serves as a reserve supply of oxygen and facilitates the movement of oxygen within muscles.

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

1duk, resolution 2.13Å

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Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
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