1ds8: Difference between revisions

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-{{STRUCTURE_1ds8|  PDB=1ds8  |  SCENE=  }}
-===PHOTOSYNTHETIC REACTION CENTER FROM RHODOBACTER SPHAEROIDES IN THE CHARGE-NEUTRAL DQAQB STATE WITH THE PROTON TRANSFER INHIBITOR CD2+===
-{{ABSTRACT_PUBMED_10677497}}
-==Function==
+==PHOTOSYNTHETIC REACTION CENTER FROM RHODOBACTER SPHAEROIDES IN THE CHARGE-NEUTRAL DQAQB STATE WITH THE PROTON TRANSFER INHIBITOR CD2+==
-[[http://www.uniprot.org/uniprot/RCEL_RHOSH RCEL_RHOSH]] The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis. [[http://www.uniprot.org/uniprot/RCEH_RHOSH RCEH_RHOSH]] The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis. [[http://www.uniprot.org/uniprot/RCEM_RHOSH RCEM_RHOSH]] The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis.
+<StructureSection load='1ds8' size='340' side='right'caption='[[1ds8]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
+== Structural highlights ==
-==About this Structure==
+<table><tr><td colspan='2'>[[1ds8]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Cereibacter_sphaeroides Cereibacter sphaeroides]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DS8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DS8 FirstGlance]. <br>
-[[1ds8]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodobacter_sphaeroides Rhodobacter sphaeroides]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DS8 OCA].
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BCL:BACTERIOCHLOROPHYLL+A'>BCL</scene>, <scene name='pdbligand=BPH:BACTERIOPHEOPHYTIN+A'>BPH</scene>, <scene name='pdbligand=CD:CADMIUM+ION'>CD</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=LDA:LAURYL+DIMETHYLAMINE-N-OXIDE'>LDA</scene>, <scene name='pdbligand=U10:UBIQUINONE-10'>U10</scene></td></tr>
-==Reference==
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ds8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ds8 OCA], [https://pdbe.org/1ds8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ds8 RCSB], [https://www.ebi.ac.uk/pdbsum/1ds8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ds8 ProSAT]</span></td></tr>
-<ref group="xtra">PMID:010677497</ref><references group="xtra"/><references/>
+</table>
-[[Category: Rhodobacter sphaeroides]]
+== Function ==
-[[Category: Abresch, E C.]]
+[https://www.uniprot.org/uniprot/RCEL_CERSP RCEL_CERSP] The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis.
-[[Category: Axelrod, H L.]]
+== Evolutionary Conservation ==
-[[Category: Feher, G.]]
+[[Image:Consurf_key_small.gif|200px|right]]
-[[Category: Okamura, M Y.]]
+Check<jmol>
-[[Category: Paddock, M L.]]
+  <jmolCheckbox>
-[[Category: Bacterial photosynthesis]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ds/1ds8_consurf.spt"</scriptWhenChecked>
-[[Category: Cation binding]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-[[Category: Integral membrane protein]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: Metal ion binding]]
+  </jmolCheckbox>
-[[Category: Photosynthesis]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ds8 ConSurf].
-[[Category: Proton transfer]]
+<div style="clear:both"></div>
-[[Category: Rhodobacter sphaeroide]]
+__TOC__
+</StructureSection>
+[[Category: Cereibacter sphaeroides]]
+[[Category: Large Structures]]
+[[Category: Abresch EC]]
+[[Category: Axelrod HL]]
+[[Category: Feher G]]
+[[Category: Okamura MY]]
+[[Category: Paddock ML]]