1ds4: Difference between revisions

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-{{Seed}}
-[[Image:1ds4.png|left|200px]]
-<!--
+==CYTOCHROME C PEROXIDASE H175G MUTANT, IMIDAZOLE COMPLEX, PH 6, 100K==
-The line below this paragraph, containing "STRUCTURE_1ds4", creates the "Structure Box" on the page.
+<StructureSection load='1ds4' size='340' side='right'caption='[[1ds4]], [[Resolution|resolution]] 2.02&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1ds4]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DS4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DS4 FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.02&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene></td></tr>
-{{STRUCTURE_1ds4|  PDB=1ds4  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ds4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ds4 OCA], [https://pdbe.org/1ds4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ds4 RCSB], [https://www.ebi.ac.uk/pdbsum/1ds4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ds4 ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/CCPR_YEAST CCPR_YEAST] Destroys radicals which are normally produced within the cells and which are toxic to biological systems.
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ds/1ds4_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ds4 ConSurf].
+<div style="clear:both"></div>
-===CYTOCHROME C PEROXIDASE H175G MUTANT, IMIDAZOLE COMPLEX, PH 6, 100K===
+==See Also==
+*[[Cytochrome c peroxidase 3D structures|Cytochrome c peroxidase 3D structures]]
+__TOC__
-<!--
+</StructureSection>
-The line below this paragraph, {{ABSTRACT_PUBMED_11170452}}, adds the Publication Abstract to the page
+[[Category: Large Structures]]
-(as it appears on PubMed at http://www.pubmed.gov), where 11170452 is the PubMed ID number.
--->
-{{ABSTRACT_PUBMED_11170452}}
-==About this Structure==
-DS4 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DS4 OCA].
-==Reference==
-Replacement of the axial histidine ligand with imidazole in cytochrome c peroxidase. 1. Effects on structure., Hirst J, Wilcox SK, Williams PA, Blankenship J, McRee DE, Goodin DB, Biochemistry. 2001 Feb 6;40(5):1265-73. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/11170452 11170452]
-[[Category: Cytochrome-c peroxidase]]
 [[Category: Saccharomyces cerevisiae]]
-[[Category: Single protein]]
+[[Category: Goodin DB]]
-[[Category: Goodin, D B.]]
+[[Category: Hirst J]]
-[[Category: Hirst, J.]]
+[[Category: McRee DE]]
-[[Category: McRee, D E.]]
+[[Category: Wilcox SK]]
-[[Category: Wilcox, S K.]]
+[[Category: Williams PA]]
-[[Category: Williams, P A.]]
-[[Category: Cavity mutant]]
-[[Category: Heme enzyme]]
-[[Category: Ligand binding]]
-[[Category: Peroxidase]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jun 30 23:31:54 2008''