1dp0: Difference between revisions

← Older edit

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-{{Seed}}
-[[Image:1dp0.png|left|200px]]
-<!--
+==E. COLI BETA-GALACTOSIDASE AT 1.7 ANGSTROM==
-The line below this paragraph, containing "STRUCTURE_1dp0", creates the "Structure Box" on the page.
+<StructureSection load='1dp0' size='340' side='right'caption='[[1dp0]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1dp0]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DP0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DP0 FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DMS:DIMETHYL+SULFOXIDE'>DMS</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-{{STRUCTURE_1dp0|  PDB=1dp0  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1dp0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dp0 OCA], [https://pdbe.org/1dp0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1dp0 RCSB], [https://www.ebi.ac.uk/pdbsum/1dp0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1dp0 ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/BGAL_ECOLI BGAL_ECOLI]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dp/1dp0_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1dp0 ConSurf].
+<div style="clear:both"></div>
-===E. COLI BETA-GALACTOSIDASE AT 1.7 ANGSTROM===
+==See Also==
+*[[Galactosidase 3D structures|Galactosidase 3D structures]]
+__TOC__
-<!--
+</StructureSection>
-The line below this paragraph, {{ABSTRACT_PUBMED_11045615}}, adds the Publication Abstract to the page
-(as it appears on PubMed at http://www.pubmed.gov), where 11045615 is the PubMed ID number.
--->
-{{ABSTRACT_PUBMED_11045615}}
-==About this Structure==
-DP0 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DP0 OCA].
-==Reference==
-High resolution refinement of beta-galactosidase in a new crystal form reveals multiple metal-binding sites and provides a structural basis for alpha-complementation., Juers DH, Jacobson RH, Wigley D, Zhang XJ, Huber RE, Tronrud DE, Matthews BW, Protein Sci. 2000 Sep;9(9):1685-99. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/11045615 11045615]
-[[Category: Beta-galactosidase]]
 [[Category: Escherichia coli]]
-[[Category: Single protein]]
+[[Category: Large Structures]]
-[[Category: Huber, R E.]]
+[[Category: Huber RE]]
-[[Category: Jacobson, R H.]]
+[[Category: Jacobson RH]]
-[[Category: Juers, D H.]]
+[[Category: Juers DH]]
-[[Category: Matthews, B W.]]
+[[Category: Matthews BW]]
-[[Category: Tronrud, D E.]]
+[[Category: Tronrud DE]]
-[[Category: Wigley, D.]]
+[[Category: Wigley D]]
-[[Category: Zhang, X J.]]
+[[Category: Zhang XJ]]
-[[Category: Beta supersandwich]]
-[[Category: Immunoglobulin]]
-[[Category: Jelly-roll barrel]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jun 30 23:24:08 2008''