1dkd: Difference between revisions

From Proteopedia
Jump to navigation Jump to search
New page: left|200px<br /><applet load="1dkd" size="450" color="white" frame="true" align="right" spinBox="true" caption="1dkd, resolution 2.1Å" /> '''CRYSTAL STRUCTURE OF ...
 
No edit summary
 
(19 intermediate revisions by the same user not shown)
Line 1: Line 1:
[[Image:1dkd.gif|left|200px]]<br /><applet load="1dkd" size="450" color="white" frame="true" align="right" spinBox="true"
caption="1dkd, resolution 2.1&Aring;" />
'''CRYSTAL STRUCTURE OF A GROEL (APICAL DOMAIN) AND A DODECAMERIC PEPTIDE COMPLEX'''<br />


==Overview==
==CRYSTAL STRUCTURE OF A GROEL (APICAL DOMAIN) AND A DODECAMERIC PEPTIDE COMPLEX==
The chaperonin GroEL is a double toriodal assembly that with its, cochaperonin GroES facilitates protein folding with an ATP-dependent, mechanism. Nonnative conformations of diverse protein substrates bind to, the apical domains surrounding the opening of the double toroid's central, cavity. Using phage display, we have selected peptides with high affinity, for the isolated apical domain. We have determined the crystal structures, of the complexes formed by the most strongly bound peptide with the, isolated apical domain, and with GroEL. The peptide interacts with the, groove between paired alpha helices in a manner similar to that of the, GroES mobile loop. Our structural analysis, combined with other results, suggests that various modes of molecular plasticity are responsible for, tight promiscuous binding of nonnative substrates and their release into, the shielded cis assembly.
<StructureSection load='1dkd' size='340' side='right'caption='[[1dkd]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[1dkd]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DKD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DKD FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1dkd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dkd OCA], [https://pdbe.org/1dkd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1dkd RCSB], [https://www.ebi.ac.uk/pdbsum/1dkd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1dkd ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/CH60_ECOLI CH60_ECOLI] Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.[HAMAP-Rule:MF_00600]  Essential for the growth of the bacteria and the assembly of several bacteriophages. Also plays a role in coupling between replication of the F plasmid and cell division of the cell.[HAMAP-Rule:MF_00600]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dk/1dkd_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1dkd ConSurf].
<div style="clear:both"></div>


==About this Structure==
==See Also==
1DKD is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1DKD OCA].
*[[Heat Shock Protein structures|Heat Shock Protein structures]]
 
__TOC__
==Reference==
</StructureSection>
The crystal structure of a GroEL/peptide complex: plasticity as a basis for substrate diversity., Chen L, Sigler PB, Cell. 1999 Dec 23;99(7):757-68. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=10619429 10619429]
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
[[Category: Single protein]]
[[Category: Large Structures]]
[[Category: Chen, L.]]
[[Category: Chen L]]
[[Category: Sigler, P.B.]]
[[Category: Sigler PB]]
[[Category: hsp60]]
[[Category: molecular chaperon]]
[[Category: peptide binding groove formed by paired helices substrate peptide in beta-sheet]]
[[Category: peptide selection]]
[[Category: phage display]]
[[Category: protein folding]]
 
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Nov 20 13:21:23 2007''

Latest revision as of 09:55, 7 February 2024

CRYSTAL STRUCTURE OF A GROEL (APICAL DOMAIN) AND A DODECAMERIC PEPTIDE COMPLEXCRYSTAL STRUCTURE OF A GROEL (APICAL DOMAIN) AND A DODECAMERIC PEPTIDE COMPLEX

Structural highlights

1dkd is a 8 chain structure with sequence from Escherichia coli. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.1Å
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

CH60_ECOLI Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.[HAMAP-Rule:MF_00600] Essential for the growth of the bacteria and the assembly of several bacteriophages. Also plays a role in coupling between replication of the F plasmid and cell division of the cell.[HAMAP-Rule:MF_00600]

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

1dkd, resolution 2.10Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
Retrieved from "https://proteopedia.openfox.io/wiki/index.php?title=1dkd&oldid=4041997"