1dde: Difference between revisions

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-{{Seed}}
-[[Image:1dde.png|left|200px]]
-<!--
+==STRUCTURE OF THE DNAG CATALYTIC CORE==
-The line below this paragraph, containing "STRUCTURE_1dde", creates the "Structure Box" on the page.
+<StructureSection load='1dde' size='340' side='right'caption='[[1dde]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1dde]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DDE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DDE FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=Y1:YTTRIUM+ION'>Y1</scene></td></tr>
-{{STRUCTURE_1dde|  PDB=1dde  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1dde FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dde OCA], [https://pdbe.org/1dde PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1dde RCSB], [https://www.ebi.ac.uk/pdbsum/1dde PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1dde ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/DNAG_ECOLI DNAG_ECOLI] RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.[HAMAP-Rule:MF_00974]<ref>PMID:1511009</ref> <ref>PMID:340457</ref>
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dd/1dde_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1dde ConSurf].
+<div style="clear:both"></div>
-===STRUCTURE OF THE DNAG CATALYTIC CORE===
+==See Also==
+*[[RNA polymerase 3D structures|RNA polymerase 3D structures]]
+== References ==
-<!--
+<references/>
-The line below this paragraph, {{ABSTRACT_PUBMED_10741967}}, adds the Publication Abstract to the page
+__TOC__
-(as it appears on PubMed at http://www.pubmed.gov), where 10741967 is the PubMed ID number.
+</StructureSection>
--->
-{{ABSTRACT_PUBMED_10741967}}
-==About this Structure==
-DDE is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DDE OCA].
-==Reference==
-<ref group="xtra">PMID:10741967</ref><references group="xtra"/>
 [[Category: Escherichia coli]]
-[[Category: Berger, J M.]]
+[[Category: Large Structures]]
-[[Category: Keck, J L.]]
+[[Category: Berger JM]]
-[[Category: Lynch, A S.]]
+[[Category: Keck JL]]
-[[Category: Roche, D D.]]
+[[Category: Lynch AS]]
-[[Category: 3-helix bundle]]
+[[Category: Roche DD]]
-[[Category: Dna-binding protein]]
-[[Category: Primase]]
-[[Category: Replication protein]]
-[[Category: Rna polymerase]]
-[[Category: Toprim]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 20:13:56 2009''